Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0631 and Psest_0632 overlap by 4 nucleotides Psest_0632 and Psest_0633 are separated by 0 nucleotides
Psest_0631: Psest_0631 - Site-specific recombinase XerD, at 682,953 to 684,428
_0631
Psest_0632: Psest_0632 - hypothetical protein, at 684,425 to 685,033
_0632
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 683.558 kb on - strand, within Psest_0631 at 683.611 kb on + strand, within Psest_0631 at 683.670 kb on - strand, within Psest_0631 at 683.674 kb on - strand, within Psest_0631 at 683.674 kb on - strand, within Psest_0631 at 683.810 kb on + strand, within Psest_0631 at 683.811 kb on - strand, within Psest_0631 at 683.811 kb on - strand, within Psest_0631 at 683.811 kb on - strand, within Psest_0631 at 683.856 kb on + strand, within Psest_0631 at 683.857 kb on - strand, within Psest_0631 at 684.091 kb on - strand, within Psest_0631 at 684.134 kb on + strand, within Psest_0631 at 684.135 kb on - strand, within Psest_0631 at 684.169 kb on - strand, within Psest_0631 at 684.190 kb on + strand, within Psest_0631 at 684.228 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.274 kb on + strand, within Psest_0631 at 684.275 kb on - strand, within Psest_0631 at 684.350 kb on + strand at 684.368 kb on - strand at 684.390 kb on - strand at 684.390 kb on - strand at 684.398 kb on + strand at 684.521 kb on - strand, within Psest_0632 at 684.558 kb on - strand, within Psest_0632 at 684.577 kb on + strand, within Psest_0632 at 684.578 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.854 kb on + strand, within Psest_0632 at 684.921 kb on - strand, within Psest_0632 at 685.069 kb on + strand at 685.180 kb on + strand at 685.206 kb on - strand at 685.215 kb on - strand at 685.310 kb on - strand, within Psest_0633 at 685.679 kb on + strand, within Psest_0633 at 685.806 kb on - strand, within Psest_0633 at 685.826 kb on - strand, within Psest_0633 at 685.827 kb on + strand, within Psest_0633 at 685.878 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.929 kb on - strand, within Psest_0633 at 685.986 kb on - strand, within Psest_0633 at 685.999 kb on + strand, within Psest_0633 at 686.000 kb on - strand, within Psest_0633
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample3 remove 683,558 - Psest_0631 0.41 -1.8 683,611 + Psest_0631 0.45 -0.2 683,670 - Psest_0631 0.49 +1.7 683,674 - Psest_0631 0.49 -2.4 683,674 - Psest_0631 0.49 +2.6 683,810 + Psest_0631 0.58 -0.3 683,811 - Psest_0631 0.58 -0.8 683,811 - Psest_0631 0.58 -2.1 683,811 - Psest_0631 0.58 +0.1 683,856 + Psest_0631 0.61 +1.4 683,857 - Psest_0631 0.61 +0.1 684,091 - Psest_0631 0.77 -1.8 684,134 + Psest_0631 0.80 -0.7 684,135 - Psest_0631 0.80 -0.8 684,169 - Psest_0631 0.82 +0.5 684,190 + Psest_0631 0.84 +0.3 684,228 + Psest_0631 0.86 -1.7 684,261 + Psest_0631 0.89 -0.3 684,261 + Psest_0631 0.89 -2.2 684,261 + Psest_0631 0.89 -0.1 684,261 + Psest_0631 0.89 +0.4 684,261 + Psest_0631 0.89 +0.2 684,274 + Psest_0631 0.89 +0.2 684,275 - Psest_0631 0.90 +0.5 684,350 + +0.9 684,368 - +0.2 684,390 - +0.4 684,390 - -0.2 684,398 + +0.1 684,521 - Psest_0632 0.16 -0.8 684,558 - Psest_0632 0.22 +0.1 684,577 + Psest_0632 0.25 -0.6 684,578 - Psest_0632 0.25 +0.5 684,675 - Psest_0632 0.41 -0.7 684,675 - Psest_0632 0.41 -0.9 684,854 + Psest_0632 0.70 -2.7 684,921 - Psest_0632 0.81 -0.7 685,069 + +1.8 685,180 + -0.0 685,206 - -1.2 685,215 - +0.0 685,310 - Psest_0633 0.13 +0.7 685,679 + Psest_0633 0.31 -0.7 685,806 - Psest_0633 0.37 -1.6 685,826 - Psest_0633 0.38 -0.5 685,827 + Psest_0633 0.38 +1.0 685,878 + Psest_0633 0.40 -0.5 685,928 + Psest_0633 0.43 -0.6 685,928 + Psest_0633 0.43 +0.0 685,928 + Psest_0633 0.43 -0.3 685,928 + Psest_0633 0.43 -0.8 685,929 - Psest_0633 0.43 -1.1 685,986 - Psest_0633 0.45 -1.5 685,999 + Psest_0633 0.46 +1.8 686,000 - Psest_0633 0.46 -2.0
Or see this region's nucleotide sequence