Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0392 and Psest_0393 are separated by 1 nucleotides Psest_0393 and Psest_0394 overlap by 4 nucleotides Psest_0394 and Psest_0395 are separated by 2 nucleotides
Psest_0392: Psest_0392 - Signal transduction histidine kinase, at 419,764 to 423,273
_0392
Psest_0393: Psest_0393 - Methylase of chemotaxis methyl-accepting proteins, at 423,275 to 424,093
_0393
Psest_0394: Psest_0394 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 424,090 to 424,692
_0394
Psest_0395: Psest_0395 - His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 424,695 to 425,885
_0395
Position (kb) 423
424
425 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 422.695 kb on + strand, within Psest_0392 at 422.695 kb on + strand, within Psest_0392 at 422.696 kb on - strand, within Psest_0392 at 422.743 kb on + strand, within Psest_0392 at 422.743 kb on + strand, within Psest_0392 at 422.743 kb on + strand, within Psest_0392 at 422.744 kb on - strand, within Psest_0392 at 422.832 kb on + strand, within Psest_0392 at 423.196 kb on + strand at 423.197 kb on - strand at 423.197 kb on - strand at 423.197 kb on - strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.341 kb on + strand at 423.342 kb on - strand at 423.356 kb on + strand at 423.357 kb on - strand, within Psest_0393 at 423.357 kb on - strand, within Psest_0393 at 423.522 kb on - strand, within Psest_0393 at 423.522 kb on - strand, within Psest_0393 at 423.522 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.671 kb on + strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.759 kb on - strand, within Psest_0393 at 423.798 kb on - strand, within Psest_0393 at 423.798 kb on - strand, within Psest_0393 at 423.798 kb on - strand, within Psest_0393 at 423.866 kb on - strand, within Psest_0393 at 423.886 kb on - strand, within Psest_0393 at 423.886 kb on - strand, within Psest_0393 at 423.886 kb on - strand, within Psest_0393 at 423.929 kb on + strand, within Psest_0393 at 423.929 kb on + strand, within Psest_0393 at 424.050 kb on - strand at 424.050 kb on - strand at 424.089 kb on + strand at 424.089 kb on + strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.247 kb on + strand, within Psest_0394 at 424.247 kb on + strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.334 kb on + strand, within Psest_0394 at 424.335 kb on - strand, within Psest_0394 at 424.335 kb on - strand, within Psest_0394 at 424.351 kb on + strand, within Psest_0394 at 424.351 kb on + strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.842 kb on + strand, within Psest_0395 at 424.870 kb on + strand, within Psest_0395 at 424.870 kb on + strand, within Psest_0395 at 424.870 kb on + strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.981 kb on - strand, within Psest_0395 at 424.981 kb on - strand, within Psest_0395 at 424.981 kb on - strand, within Psest_0395 at 425.079 kb on + strand, within Psest_0395 at 425.079 kb on + strand, within Psest_0395 at 425.080 kb on - strand, within Psest_0395
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample3 remove 422,695 + Psest_0392 0.84 -0.9 422,695 + Psest_0392 0.84 -1.5 422,696 - Psest_0392 0.84 +0.3 422,743 + Psest_0392 0.85 -1.8 422,743 + Psest_0392 0.85 -3.2 422,743 + Psest_0392 0.85 -2.9 422,744 - Psest_0392 0.85 +0.1 422,832 + Psest_0392 0.87 -2.8 423,196 + -3.5 423,197 - -0.1 423,197 - -3.8 423,197 - -2.8 423,326 + -6.4 423,326 + -5.6 423,326 + -4.9 423,326 + -3.9 423,326 + -2.3 423,327 - -5.1 423,327 - -1.3 423,327 - -1.4 423,327 - -4.3 423,327 - -4.8 423,327 - -0.5 423,327 - -2.8 423,335 + -2.3 423,335 + -5.6 423,335 + -4.1 423,335 + -5.5 423,335 + -1.8 423,335 + -4.5 423,336 - -3.0 423,336 - -3.6 423,336 - -2.9 423,336 - -4.1 423,336 - -1.8 423,341 + -4.2 423,342 - -2.3 423,356 + -5.4 423,357 - Psest_0393 0.10 -4.1 423,357 - Psest_0393 0.10 -1.8 423,522 - Psest_0393 0.30 -5.0 423,522 - Psest_0393 0.30 -3.6 423,522 - Psest_0393 0.30 -5.5 423,547 - Psest_0393 0.33 -6.2 423,547 - Psest_0393 0.33 -3.4 423,547 - Psest_0393 0.33 -5.0 423,547 - Psest_0393 0.33 -2.1 423,671 + Psest_0393 0.48 -3.3 423,672 - Psest_0393 0.48 -2.1 423,672 - Psest_0393 0.48 -2.8 423,672 - Psest_0393 0.48 -3.1 423,672 - Psest_0393 0.48 -5.0 423,672 - Psest_0393 0.48 -4.1 423,672 - Psest_0393 0.48 -4.5 423,759 - Psest_0393 0.59 -3.3 423,798 - Psest_0393 0.64 -4.4 423,798 - Psest_0393 0.64 -3.2 423,798 - Psest_0393 0.64 -4.2 423,866 - Psest_0393 0.72 -5.7 423,886 - Psest_0393 0.75 -1.3 423,886 - Psest_0393 0.75 -1.8 423,886 - Psest_0393 0.75 -2.8 423,929 + Psest_0393 0.80 -1.1 423,929 + Psest_0393 0.80 -2.1 424,050 - -4.5 424,050 - -3.6 424,089 + +0.1 424,089 + +0.2 424,090 - -1.8 424,090 - -0.6 424,090 - +0.9 424,090 - +0.7 424,090 - +0.0 424,247 + Psest_0394 0.26 +1.5 424,247 + Psest_0394 0.26 +0.5 424,248 - Psest_0394 0.26 -0.1 424,248 - Psest_0394 0.26 +1.4 424,248 - Psest_0394 0.26 +0.1 424,248 - Psest_0394 0.26 +0.0 424,248 - Psest_0394 0.26 +1.0 424,248 - Psest_0394 0.26 -0.7 424,248 - Psest_0394 0.26 +0.0 424,248 - Psest_0394 0.26 -0.7 424,334 + Psest_0394 0.40 +3.5 424,335 - Psest_0394 0.41 +0.7 424,335 - Psest_0394 0.41 +1.3 424,351 + Psest_0394 0.43 +1.8 424,351 + Psest_0394 0.43 +0.5 424,352 - Psest_0394 0.43 -0.4 424,352 - Psest_0394 0.43 -0.8 424,352 - Psest_0394 0.43 -0.2 424,352 - Psest_0394 0.43 -0.9 424,352 - Psest_0394 0.43 -0.9 424,842 + Psest_0395 0.12 +0.1 424,870 + Psest_0395 0.15 -0.2 424,870 + Psest_0395 0.15 +0.0 424,870 + Psest_0395 0.15 -0.5 424,871 - Psest_0395 0.15 -0.6 424,871 - Psest_0395 0.15 -0.5 424,871 - Psest_0395 0.15 -1.3 424,871 - Psest_0395 0.15 +0.4 424,871 - Psest_0395 0.15 -0.3 424,980 + Psest_0395 0.24 -0.8 424,980 + Psest_0395 0.24 +0.1 424,980 + Psest_0395 0.24 -0.1 424,980 + Psest_0395 0.24 +0.9 424,981 - Psest_0395 0.24 -4.5 424,981 - Psest_0395 0.24 +1.1 424,981 - Psest_0395 0.24 -0.4 425,079 + Psest_0395 0.32 -1.2 425,079 + Psest_0395 0.32 -0.8 425,080 - Psest_0395 0.32 +0.3
Or see this region's nucleotide sequence