Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0768

Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0767 and Psest_0768 are separated by 3 nucleotidesPsest_0768 and Psest_0769 are separated by 135 nucleotidesPsest_0769 and Psest_0770 are separated by 47 nucleotides Psest_0767: Psest_0767 - diguanylate cyclase (GGDEF) domain, at 836,230 to 837,636 _0767 Psest_0768: Psest_0768 - Uncharacterized conserved protein, at 837,640 to 838,467 _0768 Psest_0769: Psest_0769 - Predicted membrane protein, at 838,603 to 839,331 _0769 Psest_0770: Psest_0770 - alkylphosphonate utilization operon protein PhnA, at 839,379 to 839,723 _0770 Position (kb) 837 838 839Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 836.827 kb on + strand, within Psest_0767at 836.828 kb on - strand, within Psest_0767at 836.828 kb on - strand, within Psest_0767at 837.071 kb on + strand, within Psest_0767at 837.072 kb on - strand, within Psest_0767at 837.072 kb on - strand, within Psest_0767at 837.441 kb on + strand, within Psest_0767at 837.442 kb on - strand, within Psest_0767at 837.442 kb on - strand, within Psest_0767at 837.671 kb on + strandat 837.671 kb on + strandat 837.671 kb on + strandat 837.671 kb on + strandat 837.672 kb on - strandat 837.672 kb on - strandat 837.672 kb on - strandat 837.768 kb on - strand, within Psest_0768at 837.939 kb on + strand, within Psest_0768at 837.940 kb on - strand, within Psest_0768at 838.031 kb on + strand, within Psest_0768at 838.031 kb on + strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.091 kb on + strand, within Psest_0768at 838.184 kb on + strand, within Psest_0768at 838.185 kb on - strand, within Psest_0768at 838.185 kb on - strand, within Psest_0768at 838.242 kb on + strand, within Psest_0768at 838.243 kb on - strand, within Psest_0768at 838.244 kb on + strand, within Psest_0768at 838.244 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.329 kb on - strand, within Psest_0768at 838.329 kb on - strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.526 kb on + strandat 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.074 kb on + strand, within Psest_0769at 839.075 kb on - strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample2
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836,827 + Psest_0767 0.42 +0.2
836,828 - Psest_0767 0.43 +0.9
836,828 - Psest_0767 0.43 -0.8
837,071 + Psest_0767 0.60 +0.5
837,072 - Psest_0767 0.60 +0.6
837,072 - Psest_0767 0.60 -1.0
837,441 + Psest_0767 0.86 +0.2
837,442 - Psest_0767 0.86 -1.1
837,442 - Psest_0767 0.86 +0.9
837,671 + +0.1
837,671 + +0.7
837,671 + -0.1
837,671 + +2.7
837,672 - +0.0
837,672 - +0.4
837,672 - +0.6
837,768 - Psest_0768 0.15 +0.9
837,939 + Psest_0768 0.36 +0.1
837,940 - Psest_0768 0.36 +3.0
838,031 + Psest_0768 0.47 -0.1
838,031 + Psest_0768 0.47 -0.7
838,032 - Psest_0768 0.47 +1.6
838,032 - Psest_0768 0.47 -0.1
838,032 - Psest_0768 0.47 -0.2
838,032 - Psest_0768 0.47 -2.0
838,032 - Psest_0768 0.47 +3.4
838,091 + Psest_0768 0.54 +0.0
838,184 + Psest_0768 0.66 +4.9
838,185 - Psest_0768 0.66 +1.3
838,185 - Psest_0768 0.66 -0.8
838,242 + Psest_0768 0.73 +0.3
838,243 - Psest_0768 0.73 -0.3
838,244 + Psest_0768 0.73 +0.9
838,244 + Psest_0768 0.73 +0.7
838,328 + Psest_0768 0.83 +0.3
838,328 + Psest_0768 0.83 +2.0
838,328 + Psest_0768 0.83 +0.4
838,328 + Psest_0768 0.83 +0.8
838,329 - Psest_0768 0.83 +0.8
838,329 - Psest_0768 0.83 +1.4
838,355 + Psest_0768 0.86 +0.5
838,355 + Psest_0768 0.86 -0.3
838,355 + Psest_0768 0.86 +0.5
838,355 + Psest_0768 0.86 +0.1
838,355 + Psest_0768 0.86 +0.4
838,355 + Psest_0768 0.86 +0.1
838,356 - Psest_0768 0.86 +0.3
838,356 - Psest_0768 0.86 +0.2
838,356 - Psest_0768 0.86 +0.4
838,526 + -2.9
838,747 + Psest_0769 0.20 +2.0
838,747 + Psest_0769 0.20 -0.9
838,747 + Psest_0769 0.20 +0.3
838,747 + Psest_0769 0.20 -1.1
838,747 + Psest_0769 0.20 +0.5
838,747 + Psest_0769 0.20 +2.0
838,747 + Psest_0769 0.20 +0.3
838,747 + Psest_0769 0.20 -0.5
838,747 + Psest_0769 0.20 +0.1
838,747 + Psest_0769 0.20 +1.0
838,747 + Psest_0769 0.20 +2.3
838,747 + Psest_0769 0.20 -0.3
838,748 - Psest_0769 0.20 +0.9
838,748 - Psest_0769 0.20 -1.7
838,748 - Psest_0769 0.20 +1.5
838,748 - Psest_0769 0.20 -1.7
838,748 - Psest_0769 0.20 +1.0
838,748 - Psest_0769 0.20 +0.3
839,041 + Psest_0769 0.60 -0.1
839,041 + Psest_0769 0.60 -0.5
839,041 + Psest_0769 0.60 +0.2
839,042 - Psest_0769 0.60 +0.6
839,042 - Psest_0769 0.60 +0.1
839,074 + Psest_0769 0.65 -0.0
839,075 - Psest_0769 0.65 +1.9
839,215 + Psest_0769 0.84 +1.0
839,215 + Psest_0769 0.84 +0.5
839,292 + -0.8

Or see this region's nucleotide sequence