Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0738 and Psest_0739 are separated by 148 nucleotides Psest_0739 and Psest_0740 are separated by 4 nucleotides Psest_0740 and Psest_0741 are separated by 86 nucleotides
Psest_0738: Psest_0738 - copper-(or silver)-translocating P-type ATPase, at 810,712 to 813,090
_0738
Psest_0739: Psest_0739 - Copper chaperone, at 813,239 to 813,430
_0739
Psest_0740: Psest_0740 - Transcriptional regulator, at 813,435 to 814,199
_0740
Psest_0741: Psest_0741 - drug resistance transporter, Bcr/CflA subfamily, at 814,286 to 815,458
_0741
Position (kb) 813
814
815 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 812.483 kb on + strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.483 kb on + strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.484 kb on - strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.509 kb on + strand, within Psest_0738 at 812.510 kb on - strand, within Psest_0738 at 812.696 kb on + strand, within Psest_0738 at 812.890 kb on + strand at 812.891 kb on - strand at 812.956 kb on - strand at 813.072 kb on + strand at 813.247 kb on - strand at 813.247 kb on - strand at 813.247 kb on - strand at 813.940 kb on + strand, within Psest_0740 at 813.940 kb on + strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 813.941 kb on - strand, within Psest_0740 at 814.145 kb on - strand at 814.173 kb on + strand at 814.174 kb on - strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.187 kb on + strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.188 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.192 kb on - strand at 814.308 kb on + strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.309 kb on - strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.352 kb on + strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.353 kb on - strand at 814.427 kb on + strand, within Psest_0741 at 814.427 kb on + strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.428 kb on - strand, within Psest_0741 at 814.460 kb on + strand, within Psest_0741 at 814.832 kb on + strand, within Psest_0741 at 814.833 kb on - strand, within Psest_0741 at 814.880 kb on + strand, within Psest_0741 at 814.881 kb on - strand, within Psest_0741 at 814.948 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.958 kb on + strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.959 kb on - strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741 at 814.994 kb on + strand, within Psest_0741
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample2 remove 812,483 + Psest_0738 0.74 +0.7 812,483 + Psest_0738 0.74 +0.9 812,483 + Psest_0738 0.74 +0.5 812,484 - Psest_0738 0.74 +0.0 812,484 - Psest_0738 0.74 -0.4 812,484 - Psest_0738 0.74 -0.6 812,509 + Psest_0738 0.76 +1.3 812,509 + Psest_0738 0.76 -0.1 812,509 + Psest_0738 0.76 +1.0 812,510 - Psest_0738 0.76 +0.1 812,696 + Psest_0738 0.83 +0.7 812,890 + +2.8 812,891 - +0.5 812,956 - +0.5 813,072 + +0.9 813,247 - +0.5 813,247 - +0.6 813,247 - +0.8 813,940 + Psest_0740 0.66 -0.1 813,940 + Psest_0740 0.66 -0.3 813,941 - Psest_0740 0.66 -0.5 813,941 - Psest_0740 0.66 -2.1 814,145 - +1.0 814,173 + +0.7 814,174 - -0.1 814,187 + +0.5 814,187 + +0.9 814,187 + +1.0 814,187 + +1.0 814,187 + -0.5 814,187 + -0.7 814,187 + -2.1 814,187 + -0.6 814,187 + -1.0 814,187 + +2.6 814,187 + +0.3 814,187 + +0.0 814,187 + -0.2 814,187 + +1.6 814,188 - +0.6 814,188 - -0.2 814,188 - -0.9 814,188 - +0.1 814,188 - -1.7 814,192 - -1.1 814,192 - +1.0 814,192 - +0.2 814,192 - +0.9 814,308 + +0.5 814,309 - +0.3 814,309 - +1.3 814,309 - +0.6 814,352 + +2.5 814,352 + +0.2 814,352 + +0.1 814,352 + -0.5 814,352 + +0.4 814,352 + -0.5 814,352 + -0.4 814,352 + +0.8 814,352 + +1.5 814,352 + -0.3 814,352 + -0.3 814,352 + +0.8 814,352 + -1.1 814,352 + +0.3 814,352 + -0.2 814,352 + -0.1 814,353 - +0.0 814,353 - +2.0 814,353 - +1.2 814,353 - +0.8 814,353 - -0.4 814,353 - -1.2 814,353 - +0.5 814,353 - +0.0 814,353 - -1.5 814,353 - -4.6 814,353 - -0.0 814,353 - +1.2 814,353 - -0.1 814,353 - +1.6 814,353 - -0.1 814,353 - -0.1 814,353 - +1.0 814,353 - +0.8 814,353 - -0.5 814,353 - +1.3 814,353 - -0.3 814,427 + Psest_0741 0.12 +0.6 814,427 + Psest_0741 0.12 -2.1 814,428 - Psest_0741 0.12 +0.3 814,428 - Psest_0741 0.12 +0.5 814,460 + Psest_0741 0.15 +1.0 814,832 + Psest_0741 0.47 +0.1 814,833 - Psest_0741 0.47 +1.6 814,880 + Psest_0741 0.51 +2.5 814,881 - Psest_0741 0.51 +0.1 814,948 + Psest_0741 0.56 +3.0 814,958 + Psest_0741 0.57 -1.3 814,958 + Psest_0741 0.57 +0.1 814,959 - Psest_0741 0.57 -0.0 814,959 - Psest_0741 0.57 -0.9 814,959 - Psest_0741 0.57 -0.3 814,994 + Psest_0741 0.60 -0.2 814,994 + Psest_0741 0.60 +0.3
Or see this region's nucleotide sequence