Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2902

Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2899 and Psest_2900 overlap by 8 nucleotidesPsest_2900 and Psest_2901 are separated by 12 nucleotidesPsest_2901 and Psest_2902 are separated by 67 nucleotidesPsest_2902 and Psest_2903 overlap by 4 nucleotides Psest_2899: Psest_2899 - hypothetical protein, at 3,094,729 to 3,094,983 _2899 Psest_2900: Psest_2900 - hypothetical protein, at 3,094,976 to 3,095,365 _2900 Psest_2901: Psest_2901 - hypothetical protein, at 3,095,378 to 3,095,749 _2901 Psest_2902: Psest_2902 - hypothetical protein, at 3,095,817 to 3,097,097 _2902 Psest_2903: Psest_2903 - Site-specific recombinase XerD, at 3,097,094 to 3,098,092 _2903 Position (kb) 3095 3096 3097 3098Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3094.969 kb on + strandat 3094.969 kb on + strandat 3095.021 kb on + strand, within Psest_2900at 3095.022 kb on - strand, within Psest_2900at 3095.022 kb on - strand, within Psest_2900at 3095.022 kb on - strand, within Psest_2900at 3095.075 kb on + strand, within Psest_2900at 3095.075 kb on + strand, within Psest_2900at 3095.075 kb on + strand, within Psest_2900at 3095.092 kb on + strand, within Psest_2900at 3095.092 kb on + strand, within Psest_2900at 3095.092 kb on + strand, within Psest_2900at 3095.126 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.254 kb on - strand, within Psest_2900at 3095.254 kb on - strand, within Psest_2900at 3095.388 kb on + strandat 3095.388 kb on + strandat 3095.651 kb on - strand, within Psest_2901at 3095.651 kb on - strand, within Psest_2901at 3095.704 kb on + strand, within Psest_2901at 3095.803 kb on + strandat 3095.809 kb on + strandat 3095.810 kb on - strandat 3095.898 kb on + strandat 3095.898 kb on + strandat 3095.901 kb on - strandat 3096.085 kb on - strand, within Psest_2902at 3096.085 kb on - strand, within Psest_2902at 3096.178 kb on + strand, within Psest_2902at 3096.178 kb on + strand, within Psest_2902at 3096.234 kb on + strand, within Psest_2902at 3096.234 kb on + strand, within Psest_2902at 3096.234 kb on + strand, within Psest_2902at 3096.235 kb on - strand, within Psest_2902at 3096.235 kb on - strand, within Psest_2902at 3096.371 kb on - strand, within Psest_2902at 3096.414 kb on + strand, within Psest_2902at 3096.471 kb on + strand, within Psest_2902at 3096.471 kb on + strand, within Psest_2902at 3096.471 kb on + strand, within Psest_2902at 3096.471 kb on + strand, within Psest_2902at 3096.472 kb on - strand, within Psest_2902at 3096.472 kb on - strand, within Psest_2902at 3096.472 kb on - strand, within Psest_2902at 3096.472 kb on - strand, within Psest_2902at 3096.472 kb on - strand, within Psest_2902at 3096.472 kb on - strand, within Psest_2902at 3096.570 kb on + strand, within Psest_2902at 3096.570 kb on + strand, within Psest_2902at 3096.570 kb on + strand, within Psest_2902at 3096.571 kb on - strand, within Psest_2902at 3096.571 kb on - strand, within Psest_2902at 3096.571 kb on - strand, within Psest_2902at 3096.765 kb on + strand, within Psest_2902at 3096.768 kb on + strand, within Psest_2902at 3096.768 kb on + strand, within Psest_2902at 3096.768 kb on + strand, within Psest_2902at 3096.769 kb on - strand, within Psest_2902at 3096.808 kb on + strand, within Psest_2902at 3096.809 kb on - strand, within Psest_2902at 3096.846 kb on + strand, within Psest_2902at 3096.847 kb on - strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.858 kb on + strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.859 kb on - strand, within Psest_2902at 3096.916 kb on + strand, within Psest_2902at 3097.038 kb on + strandat 3097.038 kb on + strandat 3097.038 kb on + strandat 3097.039 kb on - strandat 3097.039 kb on - strandat 3097.142 kb on - strandat 3097.142 kb on - strandat 3097.213 kb on + strand, within Psest_2903at 3097.226 kb on + strand, within Psest_2903at 3097.227 kb on - strand, within Psest_2903at 3097.227 kb on - strand, within Psest_2903at 3097.284 kb on - strand, within Psest_2903at 3097.562 kb on + strand, within Psest_2903at 3097.563 kb on - strand, within Psest_2903at 3098.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample2
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3,094,969 + -0.6
3,094,969 + -0.4
3,095,021 + Psest_2900 0.12 -2.6
3,095,022 - Psest_2900 0.12 +0.7
3,095,022 - Psest_2900 0.12 -1.6
3,095,022 - Psest_2900 0.12 -1.0
3,095,075 + Psest_2900 0.25 +0.4
3,095,075 + Psest_2900 0.25 -0.0
3,095,075 + Psest_2900 0.25 +1.6
3,095,092 + Psest_2900 0.30 +0.5
3,095,092 + Psest_2900 0.30 +0.5
3,095,092 + Psest_2900 0.30 -1.9
3,095,126 + Psest_2900 0.38 +0.9
3,095,253 + Psest_2900 0.71 -1.0
3,095,253 + Psest_2900 0.71 +0.1
3,095,253 + Psest_2900 0.71 -0.1
3,095,253 + Psest_2900 0.71 -0.7
3,095,254 - Psest_2900 0.71 -0.6
3,095,254 - Psest_2900 0.71 -0.6
3,095,388 + +1.4
3,095,388 + +0.7
3,095,651 - Psest_2901 0.73 +1.4
3,095,651 - Psest_2901 0.73 +3.1
3,095,704 + Psest_2901 0.88 +1.5
3,095,803 + +0.5
3,095,809 + -0.6
3,095,810 - +0.7
3,095,898 + +1.1
3,095,898 + -2.0
3,095,901 - +0.9
3,096,085 - Psest_2902 0.21 -0.6
3,096,085 - Psest_2902 0.21 +0.4
3,096,178 + Psest_2902 0.28 -1.0
3,096,178 + Psest_2902 0.28 +1.1
3,096,234 + Psest_2902 0.33 +0.9
3,096,234 + Psest_2902 0.33 +0.1
3,096,234 + Psest_2902 0.33 -0.4
3,096,235 - Psest_2902 0.33 +2.4
3,096,235 - Psest_2902 0.33 -1.4
3,096,371 - Psest_2902 0.43 +0.7
3,096,414 + Psest_2902 0.47 +0.4
3,096,471 + Psest_2902 0.51 +0.4
3,096,471 + Psest_2902 0.51 +0.6
3,096,471 + Psest_2902 0.51 +1.3
3,096,471 + Psest_2902 0.51 -1.6
3,096,472 - Psest_2902 0.51 +0.6
3,096,472 - Psest_2902 0.51 -1.2
3,096,472 - Psest_2902 0.51 -3.2
3,096,472 - Psest_2902 0.51 -0.0
3,096,472 - Psest_2902 0.51 -0.0
3,096,472 - Psest_2902 0.51 +0.6
3,096,570 + Psest_2902 0.59 -1.1
3,096,570 + Psest_2902 0.59 -0.5
3,096,570 + Psest_2902 0.59 -1.2
3,096,571 - Psest_2902 0.59 -0.6
3,096,571 - Psest_2902 0.59 -1.1
3,096,571 - Psest_2902 0.59 +1.2
3,096,765 + Psest_2902 0.74 -0.4
3,096,768 + Psest_2902 0.74 -0.6
3,096,768 + Psest_2902 0.74 +0.4
3,096,768 + Psest_2902 0.74 -2.2
3,096,769 - Psest_2902 0.74 -0.6
3,096,808 + Psest_2902 0.77 +2.9
3,096,809 - Psest_2902 0.77 -0.5
3,096,846 + Psest_2902 0.80 -0.1
3,096,847 - Psest_2902 0.80 -1.1
3,096,858 + Psest_2902 0.81 +0.8
3,096,858 + Psest_2902 0.81 +0.9
3,096,858 + Psest_2902 0.81 +0.9
3,096,858 + Psest_2902 0.81 +0.1
3,096,858 + Psest_2902 0.81 -1.6
3,096,858 + Psest_2902 0.81 +1.4
3,096,858 + Psest_2902 0.81 -0.8
3,096,858 + Psest_2902 0.81 -1.1
3,096,858 + Psest_2902 0.81 -0.1
3,096,859 - Psest_2902 0.81 -0.5
3,096,859 - Psest_2902 0.81 -0.1
3,096,859 - Psest_2902 0.81 -0.2
3,096,859 - Psest_2902 0.81 +1.2
3,096,859 - Psest_2902 0.81 +0.1
3,096,859 - Psest_2902 0.81 -0.7
3,096,859 - Psest_2902 0.81 +0.1
3,096,859 - Psest_2902 0.81 -1.1
3,096,916 + Psest_2902 0.86 -0.2
3,097,038 + +1.0
3,097,038 + -1.0
3,097,038 + +0.1
3,097,039 - -0.7
3,097,039 - +0.0
3,097,142 - +1.9
3,097,142 - -0.3
3,097,213 + Psest_2903 0.12 +0.4
3,097,226 + Psest_2903 0.13 -0.2
3,097,227 - Psest_2903 0.13 -0.2
3,097,227 - Psest_2903 0.13 +1.3
3,097,284 - Psest_2903 0.19 +0.6
3,097,562 + Psest_2903 0.47 +1.2
3,097,563 - Psest_2903 0.47 -0.5
3,098,090 + +1.4

Or see this region's nucleotide sequence