Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2899 and Psest_2900 overlap by 8 nucleotides Psest_2900 and Psest_2901 are separated by 12 nucleotides Psest_2901 and Psest_2902 are separated by 67 nucleotides Psest_2902 and Psest_2903 overlap by 4 nucleotides
Psest_2899: Psest_2899 - hypothetical protein, at 3,094,729 to 3,094,983
_2899
Psest_2900: Psest_2900 - hypothetical protein, at 3,094,976 to 3,095,365
_2900
Psest_2901: Psest_2901 - hypothetical protein, at 3,095,378 to 3,095,749
_2901
Psest_2902: Psest_2902 - hypothetical protein, at 3,095,817 to 3,097,097
_2902
Psest_2903: Psest_2903 - Site-specific recombinase XerD, at 3,097,094 to 3,098,092
_2903
Position (kb)
3095
3096
3097
3098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3094.969 kb on + strand at 3094.969 kb on + strand at 3095.021 kb on + strand, within Psest_2900 at 3095.022 kb on - strand, within Psest_2900 at 3095.022 kb on - strand, within Psest_2900 at 3095.022 kb on - strand, within Psest_2900 at 3095.075 kb on + strand, within Psest_2900 at 3095.075 kb on + strand, within Psest_2900 at 3095.075 kb on + strand, within Psest_2900 at 3095.092 kb on + strand, within Psest_2900 at 3095.092 kb on + strand, within Psest_2900 at 3095.092 kb on + strand, within Psest_2900 at 3095.126 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.254 kb on - strand, within Psest_2900 at 3095.254 kb on - strand, within Psest_2900 at 3095.388 kb on + strand at 3095.388 kb on + strand at 3095.651 kb on - strand, within Psest_2901 at 3095.651 kb on - strand, within Psest_2901 at 3095.704 kb on + strand, within Psest_2901 at 3095.803 kb on + strand at 3095.809 kb on + strand at 3095.810 kb on - strand at 3095.898 kb on + strand at 3095.898 kb on + strand at 3095.901 kb on - strand at 3096.085 kb on - strand, within Psest_2902 at 3096.085 kb on - strand, within Psest_2902 at 3096.178 kb on + strand, within Psest_2902 at 3096.178 kb on + strand, within Psest_2902 at 3096.234 kb on + strand, within Psest_2902 at 3096.234 kb on + strand, within Psest_2902 at 3096.234 kb on + strand, within Psest_2902 at 3096.235 kb on - strand, within Psest_2902 at 3096.235 kb on - strand, within Psest_2902 at 3096.371 kb on - strand, within Psest_2902 at 3096.414 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.570 kb on + strand, within Psest_2902 at 3096.570 kb on + strand, within Psest_2902 at 3096.570 kb on + strand, within Psest_2902 at 3096.571 kb on - strand, within Psest_2902 at 3096.571 kb on - strand, within Psest_2902 at 3096.571 kb on - strand, within Psest_2902 at 3096.765 kb on + strand, within Psest_2902 at 3096.768 kb on + strand, within Psest_2902 at 3096.768 kb on + strand, within Psest_2902 at 3096.768 kb on + strand, within Psest_2902 at 3096.769 kb on - strand, within Psest_2902 at 3096.808 kb on + strand, within Psest_2902 at 3096.809 kb on - strand, within Psest_2902 at 3096.846 kb on + strand, within Psest_2902 at 3096.847 kb on - strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.916 kb on + strand, within Psest_2902 at 3097.038 kb on + strand at 3097.038 kb on + strand at 3097.038 kb on + strand at 3097.039 kb on - strand at 3097.039 kb on - strand at 3097.142 kb on - strand at 3097.142 kb on - strand at 3097.213 kb on + strand, within Psest_2903 at 3097.226 kb on + strand, within Psest_2903 at 3097.227 kb on - strand, within Psest_2903 at 3097.227 kb on - strand, within Psest_2903 at 3097.284 kb on - strand, within Psest_2903 at 3097.562 kb on + strand, within Psest_2903 at 3097.563 kb on - strand, within Psest_2903 at 3098.090 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample2 remove 3,094,969 + -0.6 3,094,969 + -0.4 3,095,021 + Psest_2900 0.12 -2.6 3,095,022 - Psest_2900 0.12 +0.7 3,095,022 - Psest_2900 0.12 -1.6 3,095,022 - Psest_2900 0.12 -1.0 3,095,075 + Psest_2900 0.25 +0.4 3,095,075 + Psest_2900 0.25 -0.0 3,095,075 + Psest_2900 0.25 +1.6 3,095,092 + Psest_2900 0.30 +0.5 3,095,092 + Psest_2900 0.30 +0.5 3,095,092 + Psest_2900 0.30 -1.9 3,095,126 + Psest_2900 0.38 +0.9 3,095,253 + Psest_2900 0.71 -1.0 3,095,253 + Psest_2900 0.71 +0.1 3,095,253 + Psest_2900 0.71 -0.1 3,095,253 + Psest_2900 0.71 -0.7 3,095,254 - Psest_2900 0.71 -0.6 3,095,254 - Psest_2900 0.71 -0.6 3,095,388 + +1.4 3,095,388 + +0.7 3,095,651 - Psest_2901 0.73 +1.4 3,095,651 - Psest_2901 0.73 +3.1 3,095,704 + Psest_2901 0.88 +1.5 3,095,803 + +0.5 3,095,809 + -0.6 3,095,810 - +0.7 3,095,898 + +1.1 3,095,898 + -2.0 3,095,901 - +0.9 3,096,085 - Psest_2902 0.21 -0.6 3,096,085 - Psest_2902 0.21 +0.4 3,096,178 + Psest_2902 0.28 -1.0 3,096,178 + Psest_2902 0.28 +1.1 3,096,234 + Psest_2902 0.33 +0.9 3,096,234 + Psest_2902 0.33 +0.1 3,096,234 + Psest_2902 0.33 -0.4 3,096,235 - Psest_2902 0.33 +2.4 3,096,235 - Psest_2902 0.33 -1.4 3,096,371 - Psest_2902 0.43 +0.7 3,096,414 + Psest_2902 0.47 +0.4 3,096,471 + Psest_2902 0.51 +0.4 3,096,471 + Psest_2902 0.51 +0.6 3,096,471 + Psest_2902 0.51 +1.3 3,096,471 + Psest_2902 0.51 -1.6 3,096,472 - Psest_2902 0.51 +0.6 3,096,472 - Psest_2902 0.51 -1.2 3,096,472 - Psest_2902 0.51 -3.2 3,096,472 - Psest_2902 0.51 -0.0 3,096,472 - Psest_2902 0.51 -0.0 3,096,472 - Psest_2902 0.51 +0.6 3,096,570 + Psest_2902 0.59 -1.1 3,096,570 + Psest_2902 0.59 -0.5 3,096,570 + Psest_2902 0.59 -1.2 3,096,571 - Psest_2902 0.59 -0.6 3,096,571 - Psest_2902 0.59 -1.1 3,096,571 - Psest_2902 0.59 +1.2 3,096,765 + Psest_2902 0.74 -0.4 3,096,768 + Psest_2902 0.74 -0.6 3,096,768 + Psest_2902 0.74 +0.4 3,096,768 + Psest_2902 0.74 -2.2 3,096,769 - Psest_2902 0.74 -0.6 3,096,808 + Psest_2902 0.77 +2.9 3,096,809 - Psest_2902 0.77 -0.5 3,096,846 + Psest_2902 0.80 -0.1 3,096,847 - Psest_2902 0.80 -1.1 3,096,858 + Psest_2902 0.81 +0.8 3,096,858 + Psest_2902 0.81 +0.9 3,096,858 + Psest_2902 0.81 +0.9 3,096,858 + Psest_2902 0.81 +0.1 3,096,858 + Psest_2902 0.81 -1.6 3,096,858 + Psest_2902 0.81 +1.4 3,096,858 + Psest_2902 0.81 -0.8 3,096,858 + Psest_2902 0.81 -1.1 3,096,858 + Psest_2902 0.81 -0.1 3,096,859 - Psest_2902 0.81 -0.5 3,096,859 - Psest_2902 0.81 -0.1 3,096,859 - Psest_2902 0.81 -0.2 3,096,859 - Psest_2902 0.81 +1.2 3,096,859 - Psest_2902 0.81 +0.1 3,096,859 - Psest_2902 0.81 -0.7 3,096,859 - Psest_2902 0.81 +0.1 3,096,859 - Psest_2902 0.81 -1.1 3,096,916 + Psest_2902 0.86 -0.2 3,097,038 + +1.0 3,097,038 + -1.0 3,097,038 + +0.1 3,097,039 - -0.7 3,097,039 - +0.0 3,097,142 - +1.9 3,097,142 - -0.3 3,097,213 + Psest_2903 0.12 +0.4 3,097,226 + Psest_2903 0.13 -0.2 3,097,227 - Psest_2903 0.13 -0.2 3,097,227 - Psest_2903 0.13 +1.3 3,097,284 - Psest_2903 0.19 +0.6 3,097,562 + Psest_2903 0.47 +1.2 3,097,563 - Psest_2903 0.47 -0.5 3,098,090 + +1.4
Or see this region's nucleotide sequence