Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1852

Experiment: Lactate-nitrate; anaerobic; uranyl acetate stress sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1851 and Psest_1852 are separated by 48 nucleotidesPsest_1852 and Psest_1853 are separated by 50 nucleotides Psest_1851: Psest_1851 - Uncharacterized protein conserved in bacteria, at 1,955,574 to 1,956,752 _1851 Psest_1852: Psest_1852 - Uncharacterized conserved protein, at 1,956,801 to 1,957,205 _1852 Psest_1853: Psest_1853 - MoxR-like ATPases, at 1,957,256 to 1,958,104 _1853 Position (kb) 1956 1957 1958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1955.806 kb on + strand, within Psest_1851at 1955.845 kb on + strand, within Psest_1851at 1955.845 kb on + strand, within Psest_1851at 1955.845 kb on + strand, within Psest_1851at 1955.846 kb on - strand, within Psest_1851at 1955.846 kb on - strand, within Psest_1851at 1955.846 kb on - strand, within Psest_1851at 1955.846 kb on - strand, within Psest_1851at 1955.858 kb on - strand, within Psest_1851at 1955.858 kb on - strand, within Psest_1851at 1955.948 kb on - strand, within Psest_1851at 1955.953 kb on + strand, within Psest_1851at 1955.953 kb on + strand, within Psest_1851at 1956.525 kb on + strand, within Psest_1851at 1956.525 kb on + strand, within Psest_1851at 1956.525 kb on + strand, within Psest_1851at 1956.526 kb on - strand, within Psest_1851at 1956.526 kb on - strand, within Psest_1851at 1956.526 kb on - strand, within Psest_1851at 1956.559 kb on + strand, within Psest_1851at 1956.631 kb on + strand, within Psest_1851at 1956.631 kb on + strand, within Psest_1851at 1956.631 kb on + strand, within Psest_1851at 1956.632 kb on - strand, within Psest_1851at 1956.632 kb on - strand, within Psest_1851at 1956.874 kb on + strand, within Psest_1852at 1956.874 kb on + strand, within Psest_1852at 1956.875 kb on - strand, within Psest_1852at 1956.875 kb on - strand, within Psest_1852at 1956.875 kb on - strand, within Psest_1852at 1956.875 kb on - strand, within Psest_1852at 1956.875 kb on - strand, within Psest_1852at 1956.878 kb on + strand, within Psest_1852at 1956.878 kb on + strand, within Psest_1852at 1956.879 kb on - strand, within Psest_1852at 1956.879 kb on - strand, within Psest_1852at 1956.879 kb on - strand, within Psest_1852at 1956.879 kb on - strand, within Psest_1852at 1957.019 kb on - strand, within Psest_1852at 1957.578 kb on + strand, within Psest_1853at 1957.578 kb on + strand, within Psest_1853at 1957.578 kb on + strand, within Psest_1853at 1957.578 kb on + strand, within Psest_1853at 1957.579 kb on - strand, within Psest_1853at 1957.579 kb on - strand, within Psest_1853at 1957.686 kb on + strand, within Psest_1853at 1957.692 kb on + strand, within Psest_1853at 1957.693 kb on - strand, within Psest_1853at 1957.693 kb on - strand, within Psest_1853at 1957.693 kb on - strand, within Psest_1853at 1957.693 kb on - strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.824 kb on + strand, within Psest_1853at 1957.825 kb on - strand, within Psest_1853at 1957.825 kb on - strand, within Psest_1853at 1957.825 kb on - strand, within Psest_1853at 1957.825 kb on - strand, within Psest_1853at 1957.890 kb on + strand, within Psest_1853at 1957.890 kb on + strand, within Psest_1853at 1957.891 kb on - strand, within Psest_1853at 1957.891 kb on - strand, within Psest_1853at 1958.079 kb on + strandat 1958.079 kb on + strandat 1958.080 kb on - strandat 1958.080 kb on - strandat 1958.080 kb on - strandat 1958.080 kb on - strandat 1958.080 kb on - strandat 1958.080 kb on - strandat 1958.147 kb on + strandat 1958.148 kb on - strandat 1958.163 kb on + strandat 1958.163 kb on + strandat 1958.163 kb on + strandat 1958.165 kb on + strandat 1958.166 kb on - strandat 1958.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; uranyl acetate stress sample1
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1,955,806 + Psest_1851 0.20 -0.9
1,955,845 + Psest_1851 0.23 +1.2
1,955,845 + Psest_1851 0.23 -0.0
1,955,845 + Psest_1851 0.23 +0.4
1,955,846 - Psest_1851 0.23 +0.7
1,955,846 - Psest_1851 0.23 +1.5
1,955,846 - Psest_1851 0.23 -0.4
1,955,846 - Psest_1851 0.23 -1.1
1,955,858 - Psest_1851 0.24 +0.1
1,955,858 - Psest_1851 0.24 -1.4
1,955,948 - Psest_1851 0.32 -0.4
1,955,953 + Psest_1851 0.32 -0.3
1,955,953 + Psest_1851 0.32 +0.6
1,956,525 + Psest_1851 0.81 +0.7
1,956,525 + Psest_1851 0.81 -1.7
1,956,525 + Psest_1851 0.81 +1.6
1,956,526 - Psest_1851 0.81 +0.0
1,956,526 - Psest_1851 0.81 +0.7
1,956,526 - Psest_1851 0.81 +0.6
1,956,559 + Psest_1851 0.84 +1.5
1,956,631 + Psest_1851 0.90 +0.1
1,956,631 + Psest_1851 0.90 +0.1
1,956,631 + Psest_1851 0.90 -1.3
1,956,632 - Psest_1851 0.90 +0.4
1,956,632 - Psest_1851 0.90 +0.1
1,956,874 + Psest_1852 0.18 +0.8
1,956,874 + Psest_1852 0.18 +0.4
1,956,875 - Psest_1852 0.18 -2.0
1,956,875 - Psest_1852 0.18 +0.6
1,956,875 - Psest_1852 0.18 +0.6
1,956,875 - Psest_1852 0.18 +0.2
1,956,875 - Psest_1852 0.18 +3.5
1,956,878 + Psest_1852 0.19 +0.2
1,956,878 + Psest_1852 0.19 +0.5
1,956,879 - Psest_1852 0.19 -3.0
1,956,879 - Psest_1852 0.19 +1.0
1,956,879 - Psest_1852 0.19 -1.8
1,956,879 - Psest_1852 0.19 -0.1
1,957,019 - Psest_1852 0.54 -0.2
1,957,578 + Psest_1853 0.38 +1.4
1,957,578 + Psest_1853 0.38 +0.0
1,957,578 + Psest_1853 0.38 -0.8
1,957,578 + Psest_1853 0.38 -0.8
1,957,579 - Psest_1853 0.38 +0.4
1,957,579 - Psest_1853 0.38 +0.8
1,957,686 + Psest_1853 0.51 -0.0
1,957,692 + Psest_1853 0.51 -0.1
1,957,693 - Psest_1853 0.51 +0.2
1,957,693 - Psest_1853 0.51 -1.6
1,957,693 - Psest_1853 0.51 -1.8
1,957,693 - Psest_1853 0.51 +1.0
1,957,824 + Psest_1853 0.67 +0.5
1,957,824 + Psest_1853 0.67 -0.7
1,957,824 + Psest_1853 0.67 -1.9
1,957,824 + Psest_1853 0.67 +1.0
1,957,824 + Psest_1853 0.67 +0.2
1,957,824 + Psest_1853 0.67 -1.2
1,957,824 + Psest_1853 0.67 +1.6
1,957,825 - Psest_1853 0.67 +0.3
1,957,825 - Psest_1853 0.67 +0.2
1,957,825 - Psest_1853 0.67 -0.5
1,957,825 - Psest_1853 0.67 -1.4
1,957,890 + Psest_1853 0.75 -1.7
1,957,890 + Psest_1853 0.75 +2.3
1,957,891 - Psest_1853 0.75 +0.2
1,957,891 - Psest_1853 0.75 +0.2
1,958,079 + -0.6
1,958,079 + +2.0
1,958,080 - +0.6
1,958,080 - -0.0
1,958,080 - +0.3
1,958,080 - +0.8
1,958,080 - -0.6
1,958,080 - -0.4
1,958,147 + +1.1
1,958,148 - +0.3
1,958,163 + +0.6
1,958,163 + -0.0
1,958,163 + -2.2
1,958,165 + +0.6
1,958,166 - +0.9
1,958,166 - +0.0

Or see this region's nucleotide sequence