Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3491

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3490 and Psest_3491 overlap by 23 nucleotidesPsest_3491 and Psest_3492 are separated by 169 nucleotides Psest_3490: Psest_3490 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 3,663,192 to 3,665,195 _3490 Psest_3491: Psest_3491 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,665,173 to 3,665,781 _3491 Psest_3492: Psest_3492 - hypothetical protein, at 3,665,951 to 3,666,736 _3492 Position (kb) 3665 3666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3664.237 kb on - strand, within Psest_3490at 3664.949 kb on + strand, within Psest_3490at 3664.980 kb on + strand, within Psest_3490at 3665.124 kb on + strandat 3665.125 kb on - strandat 3665.125 kb on - strandat 3665.125 kb on - strandat 3665.125 kb on - strandat 3665.883 kb on - strandat 3665.939 kb on + strandat 3665.939 kb on + strandat 3665.940 kb on - strandat 3665.940 kb on - strandat 3665.967 kb on + strandat 3666.092 kb on + strand, within Psest_3492at 3666.092 kb on + strand, within Psest_3492at 3666.093 kb on - strand, within Psest_3492at 3666.093 kb on - strand, within Psest_3492at 3666.093 kb on - strand, within Psest_3492at 3666.440 kb on + strand, within Psest_3492at 3666.440 kb on + strand, within Psest_3492at 3666.440 kb on + strand, within Psest_3492at 3666.707 kb on + strandat 3666.745 kb on + strandat 3666.745 kb on + strandat 3666.746 kb on - strandat 3666.768 kb on + strandat 3666.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample3
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3,664,237 - Psest_3490 0.52 +2.3
3,664,949 + Psest_3490 0.88 -0.0
3,664,980 + Psest_3490 0.89 +1.0
3,665,124 + +1.7
3,665,125 - +4.7
3,665,125 - +1.9
3,665,125 - -0.9
3,665,125 - -1.1
3,665,883 - +2.7
3,665,939 + -2.1
3,665,939 + +0.3
3,665,940 - -2.6
3,665,940 - -0.3
3,665,967 + -2.8
3,666,092 + Psest_3492 0.18 -0.2
3,666,092 + Psest_3492 0.18 -0.2
3,666,093 - Psest_3492 0.18 +0.1
3,666,093 - Psest_3492 0.18 -0.9
3,666,093 - Psest_3492 0.18 +0.4
3,666,440 + Psest_3492 0.62 +0.8
3,666,440 + Psest_3492 0.62 +0.0
3,666,440 + Psest_3492 0.62 -0.7
3,666,707 + -0.1
3,666,745 + +1.3
3,666,745 + +0.3
3,666,746 - -1.3
3,666,768 + -1.0
3,666,776 - +1.1

Or see this region's nucleotide sequence