Experiment: Lactate-nitrate; anaerobic; dichromate stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3088 and Psest_3089 are separated by 127 nucleotides Psest_3089 and Psest_3090 overlap by 8 nucleotides Psest_3090 and Psest_3091 are separated by 48 nucleotides Psest_3091 and Psest_3092 overlap by 8 nucleotides
Psest_3088: Psest_3088 - Protein of unknown function (DUF2905)., at 3,268,258 to 3,268,464
_3088
Psest_3089: Psest_3089 - pyridoxine 5'-phosphate synthase, at 3,268,592 to 3,269,338
_3089
Psest_3090: Psest_3090 - DNA repair protein RecO, at 3,269,331 to 3,270,020
_3090
Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980
_3091
Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662
_3092
Position (kb)
3269
3270
3271 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3268.475 kb on - strand at 3268.564 kb on - strand at 3269.589 kb on - strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.592 kb on + strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.593 kb on - strand, within Psest_3090 at 3269.701 kb on + strand, within Psest_3090 at 3269.701 kb on + strand, within Psest_3090 at 3269.702 kb on - strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.767 kb on + strand, within Psest_3090 at 3269.768 kb on - strand, within Psest_3090 at 3269.768 kb on - strand, within Psest_3090 at 3269.768 kb on - strand, within Psest_3090 at 3269.983 kb on + strand at 3269.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample3 remove 3,268,475 - -0.4 3,268,564 - -0.4 3,269,589 - Psest_3090 0.37 -0.2 3,269,592 + Psest_3090 0.38 -3.1 3,269,592 + Psest_3090 0.38 -1.2 3,269,592 + Psest_3090 0.38 -0.3 3,269,592 + Psest_3090 0.38 -2.5 3,269,592 + Psest_3090 0.38 -0.8 3,269,593 - Psest_3090 0.38 -2.6 3,269,593 - Psest_3090 0.38 -3.2 3,269,593 - Psest_3090 0.38 -2.0 3,269,593 - Psest_3090 0.38 -1.8 3,269,593 - Psest_3090 0.38 -3.2 3,269,593 - Psest_3090 0.38 -3.1 3,269,593 - Psest_3090 0.38 -2.4 3,269,593 - Psest_3090 0.38 -2.7 3,269,593 - Psest_3090 0.38 -1.6 3,269,593 - Psest_3090 0.38 -2.8 3,269,593 - Psest_3090 0.38 -1.4 3,269,701 + Psest_3090 0.54 -2.7 3,269,701 + Psest_3090 0.54 -1.2 3,269,702 - Psest_3090 0.54 -0.8 3,269,767 + Psest_3090 0.63 -2.1 3,269,767 + Psest_3090 0.63 -2.3 3,269,767 + Psest_3090 0.63 -1.1 3,269,767 + Psest_3090 0.63 -2.4 3,269,767 + Psest_3090 0.63 -0.2 3,269,768 - Psest_3090 0.63 -3.3 3,269,768 - Psest_3090 0.63 -1.1 3,269,768 - Psest_3090 0.63 -1.2 3,269,983 + +0.2 3,269,984 - -3.7
Or see this region's nucleotide sequence