Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0916

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0915 and Psest_0916 are separated by 566 nucleotidesPsest_0916 and Psest_0917 are separated by 448 nucleotides Psest_0915: Psest_0915 - hypothetical protein, at 994,595 to 995,029 _0915 Psest_0916: Psest_0916 - Phage integrase family., at 995,596 to 996,489 _0916 Psest_0917: Psest_0917 - SEC-C motif., at 996,938 to 998,293 _0917 Position (kb) 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 994.657 kb on - strand, within Psest_0915at 994.701 kb on - strand, within Psest_0915at 994.839 kb on + strand, within Psest_0915at 994.840 kb on - strand, within Psest_0915at 994.840 kb on - strand, within Psest_0915at 994.895 kb on + strand, within Psest_0915at 994.895 kb on + strand, within Psest_0915at 994.896 kb on - strand, within Psest_0915at 994.896 kb on - strand, within Psest_0915at 994.896 kb on - strand, within Psest_0915at 994.898 kb on - strand, within Psest_0915at 994.976 kb on + strand, within Psest_0915at 994.976 kb on + strand, within Psest_0915at 994.977 kb on - strand, within Psest_0915at 994.977 kb on - strand, within Psest_0915at 994.977 kb on - strand, within Psest_0915at 995.019 kb on - strandat 995.065 kb on + strandat 995.151 kb on + strandat 995.155 kb on + strandat 995.156 kb on - strandat 995.180 kb on + strandat 995.185 kb on + strandat 995.186 kb on - strandat 995.186 kb on - strandat 995.203 kb on + strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.276 kb on - strandat 995.282 kb on - strandat 995.367 kb on + strandat 995.367 kb on + strandat 995.368 kb on - strandat 995.368 kb on - strandat 995.688 kb on + strand, within Psest_0916at 995.881 kb on - strand, within Psest_0916at 995.912 kb on + strand, within Psest_0916at 995.912 kb on + strand, within Psest_0916at 995.958 kb on - strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.023 kb on + strand, within Psest_0916at 996.023 kb on + strand, within Psest_0916at 996.023 kb on + strand, within Psest_0916at 996.024 kb on - strand, within Psest_0916at 996.024 kb on - strand, within Psest_0916at 996.024 kb on - strand, within Psest_0916at 996.126 kb on + strand, within Psest_0916at 996.126 kb on + strand, within Psest_0916at 996.146 kb on + strand, within Psest_0916at 996.147 kb on - strand, within Psest_0916at 996.214 kb on - strand, within Psest_0916at 996.214 kb on - strand, within Psest_0916at 996.214 kb on - strand, within Psest_0916at 996.214 kb on - strand, within Psest_0916at 996.217 kb on + strand, within Psest_0916at 996.218 kb on - strand, within Psest_0916at 996.218 kb on - strand, within Psest_0916at 996.218 kb on - strand, within Psest_0916at 996.283 kb on + strand, within Psest_0916at 996.283 kb on + strand, within Psest_0916at 996.283 kb on + strand, within Psest_0916at 996.283 kb on + strand, within Psest_0916at 996.283 kb on + strand, within Psest_0916at 996.283 kb on + strand, within Psest_0916at 996.284 kb on - strand, within Psest_0916at 996.402 kb on + strandat 996.402 kb on + strandat 996.402 kb on + strandat 996.402 kb on + strandat 996.402 kb on + strandat 996.402 kb on + strandat 996.402 kb on + strandat 996.402 kb on + strandat 996.403 kb on - strandat 996.403 kb on - strandat 996.403 kb on - strandat 996.442 kb on - strandat 996.465 kb on + strandat 996.465 kb on + strandat 996.465 kb on + strandat 996.465 kb on + strandat 996.465 kb on + strandat 996.544 kb on + strandat 996.544 kb on + strandat 996.545 kb on - strandat 996.549 kb on - strandat 996.579 kb on + strandat 996.579 kb on + strandat 996.580 kb on - strandat 996.605 kb on + strandat 996.609 kb on + strandat 996.609 kb on + strandat 996.609 kb on + strandat 996.609 kb on + strandat 996.609 kb on + strandat 996.610 kb on - strandat 996.610 kb on - strandat 996.612 kb on + strandat 996.613 kb on - strandat 996.751 kb on + strandat 996.788 kb on + strandat 996.789 kb on - strandat 996.789 kb on - strandat 996.789 kb on - strandat 996.851 kb on + strandat 996.851 kb on + strandat 996.854 kb on + strandat 996.860 kb on + strandat 996.861 kb on - strandat 996.885 kb on + strandat 996.885 kb on + strandat 996.885 kb on + strandat 996.886 kb on - strandat 996.966 kb on + strandat 996.966 kb on + strandat 996.967 kb on - strandat 996.967 kb on - strandat 997.084 kb on - strand, within Psest_0917at 997.302 kb on + strand, within Psest_0917at 997.302 kb on + strand, within Psest_0917at 997.303 kb on - strand, within Psest_0917at 997.314 kb on + strand, within Psest_0917at 997.314 kb on + strand, within Psest_0917at 997.315 kb on - strand, within Psest_0917at 997.486 kb on - strand, within Psest_0917

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2
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994,657 - Psest_0915 0.14 -0.0
994,701 - Psest_0915 0.24 -1.2
994,839 + Psest_0915 0.56 +0.6
994,840 - Psest_0915 0.56 -0.3
994,840 - Psest_0915 0.56 +0.6
994,895 + Psest_0915 0.69 -1.9
994,895 + Psest_0915 0.69 -1.7
994,896 - Psest_0915 0.69 -3.4
994,896 - Psest_0915 0.69 +0.3
994,896 - Psest_0915 0.69 +1.1
994,898 - Psest_0915 0.70 -0.9
994,976 + Psest_0915 0.88 +0.6
994,976 + Psest_0915 0.88 -1.4
994,977 - Psest_0915 0.88 +0.6
994,977 - Psest_0915 0.88 +0.1
994,977 - Psest_0915 0.88 -0.5
995,019 - +1.6
995,065 + +1.0
995,151 + +0.2
995,155 + -0.5
995,156 - -0.4
995,180 + -1.2
995,185 + -2.9
995,186 - +0.9
995,186 - +0.1
995,203 + +0.4
995,204 - -1.4
995,204 - -0.1
995,204 - +0.4
995,204 - -0.0
995,204 - -0.2
995,276 - -1.0
995,282 - +0.4
995,367 + -0.9
995,367 + -0.6
995,368 - -0.1
995,368 - -1.2
995,688 + Psest_0916 0.10 +2.2
995,881 - Psest_0916 0.32 -0.5
995,912 + Psest_0916 0.35 -0.5
995,912 + Psest_0916 0.35 -0.8
995,958 - Psest_0916 0.40 -0.5
996,021 + Psest_0916 0.48 +0.8
996,021 + Psest_0916 0.48 +0.5
996,021 + Psest_0916 0.48 +0.6
996,021 + Psest_0916 0.48 -0.2
996,022 - Psest_0916 0.48 +0.4
996,022 - Psest_0916 0.48 +1.1
996,022 - Psest_0916 0.48 -0.9
996,022 - Psest_0916 0.48 -3.3
996,022 - Psest_0916 0.48 -0.4
996,022 - Psest_0916 0.48 -0.3
996,022 - Psest_0916 0.48 -1.4
996,023 + Psest_0916 0.48 -0.7
996,023 + Psest_0916 0.48 -2.2
996,023 + Psest_0916 0.48 -0.8
996,024 - Psest_0916 0.48 +2.0
996,024 - Psest_0916 0.48 -1.9
996,024 - Psest_0916 0.48 +2.4
996,126 + Psest_0916 0.59 -2.1
996,126 + Psest_0916 0.59 -1.7
996,146 + Psest_0916 0.62 -2.2
996,147 - Psest_0916 0.62 -0.6
996,214 - Psest_0916 0.69 +1.2
996,214 - Psest_0916 0.69 -0.3
996,214 - Psest_0916 0.69 -0.4
996,214 - Psest_0916 0.69 -1.8
996,217 + Psest_0916 0.69 -1.8
996,218 - Psest_0916 0.70 +0.6
996,218 - Psest_0916 0.70 +0.9
996,218 - Psest_0916 0.70 -0.6
996,283 + Psest_0916 0.77 -0.6
996,283 + Psest_0916 0.77 -0.2
996,283 + Psest_0916 0.77 -0.1
996,283 + Psest_0916 0.77 -1.4
996,283 + Psest_0916 0.77 -1.1
996,283 + Psest_0916 0.77 -0.0
996,284 - Psest_0916 0.77 +0.6
996,402 + -1.1
996,402 + +0.3
996,402 + +0.2
996,402 + -0.6
996,402 + -2.4
996,402 + -0.4
996,402 + -0.9
996,402 + -0.0
996,403 - -0.9
996,403 - +0.2
996,403 - +2.0
996,442 - -1.2
996,465 + -0.5
996,465 + -0.4
996,465 + -2.8
996,465 + -0.4
996,465 + -1.0
996,544 + +0.6
996,544 + -0.2
996,545 - -1.1
996,549 - +0.6
996,579 + +2.1
996,579 + -0.2
996,580 - -1.1
996,605 + -0.3
996,609 + -0.6
996,609 + -0.4
996,609 + -0.3
996,609 + +2.5
996,609 + -0.4
996,610 - -0.1
996,610 - +1.2
996,612 + -0.6
996,613 - -1.1
996,751 + -1.4
996,788 + -0.7
996,789 - -0.0
996,789 - +2.1
996,789 - -1.2
996,851 + -1.3
996,851 + -1.6
996,854 + -0.8
996,860 + +0.4
996,861 - -0.2
996,885 + -1.9
996,885 + +0.0
996,885 + -0.4
996,886 - +0.2
996,966 + -2.4
996,966 + -0.1
996,967 - +0.7
996,967 - -0.4
997,084 - Psest_0917 0.11 -0.5
997,302 + Psest_0917 0.27 -0.8
997,302 + Psest_0917 0.27 +0.1
997,303 - Psest_0917 0.27 -1.3
997,314 + Psest_0917 0.28 -0.7
997,314 + Psest_0917 0.28 +0.4
997,315 - Psest_0917 0.28 +0.3
997,486 - Psest_0917 0.40 -0.6

Or see this region's nucleotide sequence