Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0815

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0814 and Psest_0815 are separated by 343 nucleotidesPsest_0815 and Psest_0816 are separated by 69 nucleotidesPsest_0816 and Psest_0817 are separated by 49 nucleotides Psest_0814: Psest_0814 - MoxR-like ATPases, at 888,837 to 889,649 _0814 Psest_0815: Psest_0815 - Cytochrome c, mono- and diheme variants, at 889,993 to 891,675 _0815 Psest_0816: Psest_0816 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 891,745 to 892,350 _0816 Psest_0817: Psest_0817 - Ethylbenzene dehydrogenase., at 892,400 to 893,275 _0817 Position (kb) 889 890 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 889.195 kb on + strand, within Psest_0814at 889.195 kb on + strand, within Psest_0814at 889.196 kb on - strand, within Psest_0814at 889.196 kb on - strand, within Psest_0814at 889.196 kb on - strand, within Psest_0814at 889.460 kb on - strand, within Psest_0814at 889.598 kb on - strandat 889.598 kb on - strandat 889.658 kb on - strandat 889.658 kb on - strandat 889.658 kb on - strandat 889.765 kb on + strandat 889.765 kb on + strandat 889.766 kb on - strandat 889.766 kb on - strandat 889.900 kb on - strandat 889.950 kb on + strandat 889.954 kb on + strandat 889.954 kb on + strandat 889.955 kb on - strandat 889.955 kb on - strandat 889.955 kb on - strandat 889.982 kb on - strandat 890.008 kb on - strandat 890.008 kb on - strandat 890.013 kb on + strandat 890.040 kb on - strandat 890.040 kb on - strandat 890.119 kb on + strandat 890.119 kb on + strandat 890.119 kb on + strandat 890.119 kb on + strandat 890.119 kb on + strandat 890.120 kb on - strandat 890.120 kb on - strandat 890.120 kb on - strandat 890.120 kb on - strandat 890.120 kb on - strandat 890.120 kb on - strandat 890.120 kb on - strandat 890.275 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.302 kb on + strand, within Psest_0815at 890.303 kb on - strand, within Psest_0815at 890.303 kb on - strand, within Psest_0815at 890.303 kb on - strand, within Psest_0815at 890.303 kb on - strand, within Psest_0815at 890.303 kb on - strand, within Psest_0815at 890.303 kb on - strand, within Psest_0815at 890.348 kb on - strand, within Psest_0815at 890.348 kb on - strand, within Psest_0815at 890.532 kb on + strand, within Psest_0815at 890.532 kb on + strand, within Psest_0815at 890.532 kb on + strand, within Psest_0815at 890.533 kb on - strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.605 kb on + strand, within Psest_0815at 890.606 kb on - strand, within Psest_0815at 890.606 kb on - strand, within Psest_0815at 890.606 kb on - strand, within Psest_0815at 890.606 kb on - strand, within Psest_0815at 890.606 kb on - strand, within Psest_0815at 890.606 kb on - strand, within Psest_0815at 890.607 kb on + strand, within Psest_0815at 890.607 kb on + strand, within Psest_0815at 890.651 kb on - strand, within Psest_0815at 890.740 kb on + strand, within Psest_0815at 890.740 kb on + strand, within Psest_0815at 890.740 kb on + strand, within Psest_0815at 890.740 kb on + strand, within Psest_0815at 890.741 kb on - strand, within Psest_0815at 890.741 kb on - strand, within Psest_0815at 890.741 kb on - strand, within Psest_0815at 890.741 kb on - strand, within Psest_0815at 890.741 kb on - strand, within Psest_0815at 890.741 kb on - strand, within Psest_0815at 890.758 kb on + strand, within Psest_0815at 890.758 kb on + strand, within Psest_0815at 890.758 kb on + strand, within Psest_0815at 890.758 kb on + strand, within Psest_0815at 890.759 kb on - strand, within Psest_0815at 890.848 kb on + strand, within Psest_0815at 890.849 kb on - strand, within Psest_0815at 890.849 kb on - strand, within Psest_0815at 890.947 kb on + strand, within Psest_0815at 890.947 kb on + strand, within Psest_0815at 890.948 kb on - strand, within Psest_0815at 890.948 kb on - strand, within Psest_0815at 890.992 kb on - strand, within Psest_0815at 891.019 kb on + strand, within Psest_0815at 891.020 kb on - strand, within Psest_0815at 891.032 kb on - strand, within Psest_0815at 891.032 kb on - strand, within Psest_0815at 891.242 kb on - strand, within Psest_0815at 891.250 kb on + strand, within Psest_0815at 891.250 kb on + strand, within Psest_0815at 891.250 kb on + strand, within Psest_0815at 891.250 kb on + strand, within Psest_0815at 891.251 kb on - strand, within Psest_0815at 891.391 kb on + strand, within Psest_0815at 891.391 kb on + strand, within Psest_0815at 891.392 kb on - strand, within Psest_0815at 891.392 kb on - strand, within Psest_0815at 891.571 kb on + strandat 891.572 kb on - strandat 891.661 kb on + strandat 891.661 kb on + strandat 891.662 kb on - strandat 891.662 kb on - strandat 891.662 kb on - strandat 891.662 kb on - strandat 891.662 kb on - strandat 891.662 kb on - strandat 891.671 kb on - strandat 891.673 kb on + strandat 891.674 kb on - strandat 891.697 kb on - strandat 891.959 kb on - strand, within Psest_0816at 891.959 kb on - strand, within Psest_0816at 892.326 kb on + strandat 892.327 kb on - strandat 892.327 kb on - strandat 892.327 kb on - strandat 892.327 kb on - strandat 892.353 kb on + strandat 892.354 kb on - strandat 892.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2
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889,195 + Psest_0814 0.44 +0.6
889,195 + Psest_0814 0.44 +0.4
889,196 - Psest_0814 0.44 -2.3
889,196 - Psest_0814 0.44 -1.4
889,196 - Psest_0814 0.44 -1.0
889,460 - Psest_0814 0.77 -1.7
889,598 - -2.1
889,598 - -2.1
889,658 - +0.4
889,658 - -1.7
889,658 - -2.2
889,765 + +2.2
889,765 + +1.7
889,766 - +0.5
889,766 - -0.7
889,900 - -2.4
889,950 + -0.3
889,954 + -2.5
889,954 + -0.0
889,955 - -1.4
889,955 - -0.7
889,955 - +0.2
889,982 - +0.2
890,008 - -3.6
890,008 - -2.9
890,013 + -2.2
890,040 - -2.2
890,040 - -2.7
890,119 + +1.0
890,119 + -1.6
890,119 + -1.4
890,119 + -3.2
890,119 + -2.0
890,120 - -2.1
890,120 - -2.8
890,120 - -2.4
890,120 - -2.3
890,120 - +0.2
890,120 - -3.4
890,120 - -2.4
890,275 + Psest_0815 0.17 -2.4
890,302 + Psest_0815 0.18 -3.5
890,302 + Psest_0815 0.18 -2.0
890,302 + Psest_0815 0.18 -1.7
890,302 + Psest_0815 0.18 -2.1
890,302 + Psest_0815 0.18 -0.7
890,302 + Psest_0815 0.18 -0.7
890,302 + Psest_0815 0.18 -3.3
890,302 + Psest_0815 0.18 -3.3
890,303 - Psest_0815 0.18 -0.4
890,303 - Psest_0815 0.18 -3.1
890,303 - Psest_0815 0.18 -0.0
890,303 - Psest_0815 0.18 -1.4
890,303 - Psest_0815 0.18 -2.5
890,303 - Psest_0815 0.18 -2.1
890,348 - Psest_0815 0.21 -1.3
890,348 - Psest_0815 0.21 -1.6
890,532 + Psest_0815 0.32 -3.7
890,532 + Psest_0815 0.32 -0.7
890,532 + Psest_0815 0.32 -2.2
890,533 - Psest_0815 0.32 -2.3
890,605 + Psest_0815 0.36 -3.0
890,605 + Psest_0815 0.36 -1.7
890,605 + Psest_0815 0.36 -2.4
890,605 + Psest_0815 0.36 -1.4
890,605 + Psest_0815 0.36 +0.6
890,605 + Psest_0815 0.36 -0.4
890,605 + Psest_0815 0.36 -1.4
890,606 - Psest_0815 0.36 -2.6
890,606 - Psest_0815 0.36 -1.0
890,606 - Psest_0815 0.36 -1.7
890,606 - Psest_0815 0.36 -3.5
890,606 - Psest_0815 0.36 -3.1
890,606 - Psest_0815 0.36 -3.6
890,607 + Psest_0815 0.36 -1.4
890,607 + Psest_0815 0.36 -1.3
890,651 - Psest_0815 0.39 -3.5
890,740 + Psest_0815 0.44 -3.1
890,740 + Psest_0815 0.44 -3.0
890,740 + Psest_0815 0.44 -1.1
890,740 + Psest_0815 0.44 -0.3
890,741 - Psest_0815 0.44 -1.6
890,741 - Psest_0815 0.44 -1.9
890,741 - Psest_0815 0.44 -1.7
890,741 - Psest_0815 0.44 -3.0
890,741 - Psest_0815 0.44 -1.7
890,741 - Psest_0815 0.44 -1.0
890,758 + Psest_0815 0.45 -0.9
890,758 + Psest_0815 0.45 -1.4
890,758 + Psest_0815 0.45 -1.1
890,758 + Psest_0815 0.45 -0.4
890,759 - Psest_0815 0.46 +0.6
890,848 + Psest_0815 0.51 -3.3
890,849 - Psest_0815 0.51 -2.7
890,849 - Psest_0815 0.51 -0.0
890,947 + Psest_0815 0.57 -2.7
890,947 + Psest_0815 0.57 -0.7
890,948 - Psest_0815 0.57 -2.6
890,948 - Psest_0815 0.57 -1.8
890,992 - Psest_0815 0.59 -0.8
891,019 + Psest_0815 0.61 -2.4
891,020 - Psest_0815 0.61 -2.9
891,032 - Psest_0815 0.62 -3.0
891,032 - Psest_0815 0.62 -1.1
891,242 - Psest_0815 0.74 -3.3
891,250 + Psest_0815 0.75 +2.2
891,250 + Psest_0815 0.75 -1.1
891,250 + Psest_0815 0.75 -2.1
891,250 + Psest_0815 0.75 -2.1
891,251 - Psest_0815 0.75 -2.0
891,391 + Psest_0815 0.83 -2.4
891,391 + Psest_0815 0.83 -1.5
891,392 - Psest_0815 0.83 -3.4
891,392 - Psest_0815 0.83 -0.4
891,571 + -1.6
891,572 - -3.7
891,661 + -2.5
891,661 + -1.3
891,662 - -1.4
891,662 - -0.4
891,662 - -1.7
891,662 - -1.9
891,662 - -2.0
891,662 - -1.4
891,671 - -0.8
891,673 + +0.9
891,674 - -1.3
891,697 - -1.3
891,959 - Psest_0816 0.35 -2.0
891,959 - Psest_0816 0.35 -2.0
892,326 + -3.3
892,327 - -0.4
892,327 - -1.7
892,327 - -0.6
892,327 - -2.8
892,353 + +0.3
892,354 - +0.4
892,462 + -2.3

Or see this region's nucleotide sequence