Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0493 and Psest_0494 are separated by 11 nucleotides Psest_0494 and Psest_0495 are separated by 47 nucleotides
Psest_0493: Psest_0493 - phosphatidylserine decarboxylase precursor, at 547,623 to 548,522
_0493
Psest_0494: Psest_0494 - Rhodanese-related sulfurtransferase, at 548,534 to 549,349
_0494
Psest_0495: Psest_0495 - HDOD domain., at 549,397 to 550,911
_0495
Position (kb) 548
549
550 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 547.563 kb on + strand at 548.589 kb on + strand at 548.632 kb on - strand, within Psest_0494 at 548.632 kb on - strand, within Psest_0494 at 548.632 kb on - strand, within Psest_0494 at 548.632 kb on - strand, within Psest_0494 at 548.632 kb on - strand, within Psest_0494 at 548.736 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 548.893 kb on - strand, within Psest_0494 at 549.091 kb on - strand, within Psest_0494 at 549.091 kb on - strand, within Psest_0494 at 549.091 kb on - strand, within Psest_0494 at 549.100 kb on - strand, within Psest_0494 at 549.100 kb on - strand, within Psest_0494 at 549.100 kb on - strand, within Psest_0494 at 549.370 kb on - strand at 549.370 kb on - strand at 549.370 kb on - strand at 549.370 kb on - strand at 549.668 kb on - strand, within Psest_0495 at 549.668 kb on - strand, within Psest_0495 at 549.668 kb on - strand, within Psest_0495 at 549.668 kb on - strand, within Psest_0495 at 549.668 kb on - strand, within Psest_0495 at 549.832 kb on + strand, within Psest_0495 at 549.832 kb on + strand, within Psest_0495 at 549.832 kb on + strand, within Psest_0495 at 549.832 kb on + strand, within Psest_0495 at 549.832 kb on + strand, within Psest_0495 at 550.064 kb on + strand, within Psest_0495 at 550.064 kb on + strand, within Psest_0495 at 550.064 kb on + strand, within Psest_0495 at 550.064 kb on + strand, within Psest_0495 at 550.065 kb on - strand, within Psest_0495 at 550.065 kb on - strand, within Psest_0495 at 550.065 kb on - strand, within Psest_0495
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2 remove 547,563 + -1.0 548,589 + +0.6 548,632 - Psest_0494 0.12 -1.4 548,632 - Psest_0494 0.12 -2.2 548,632 - Psest_0494 0.12 -3.7 548,632 - Psest_0494 0.12 -1.5 548,632 - Psest_0494 0.12 -1.4 548,736 - Psest_0494 0.25 +0.6 548,893 - Psest_0494 0.44 -2.7 548,893 - Psest_0494 0.44 -1.5 548,893 - Psest_0494 0.44 -1.4 548,893 - Psest_0494 0.44 -1.9 548,893 - Psest_0494 0.44 -2.1 548,893 - Psest_0494 0.44 -2.1 548,893 - Psest_0494 0.44 -3.7 548,893 - Psest_0494 0.44 -2.3 548,893 - Psest_0494 0.44 -4.4 548,893 - Psest_0494 0.44 -1.7 548,893 - Psest_0494 0.44 -2.0 548,893 - Psest_0494 0.44 -3.4 548,893 - Psest_0494 0.44 -2.7 548,893 - Psest_0494 0.44 -2.0 548,893 - Psest_0494 0.44 -1.8 548,893 - Psest_0494 0.44 +2.9 548,893 - Psest_0494 0.44 +0.8 549,091 - Psest_0494 0.68 -3.1 549,091 - Psest_0494 0.68 -5.3 549,091 - Psest_0494 0.68 -2.0 549,100 - Psest_0494 0.69 -2.4 549,100 - Psest_0494 0.69 +0.9 549,100 - Psest_0494 0.69 -1.0 549,370 - -0.1 549,370 - -0.5 549,370 - -1.1 549,370 - -0.4 549,668 - Psest_0495 0.18 +0.4 549,668 - Psest_0495 0.18 +1.4 549,668 - Psest_0495 0.18 +0.5 549,668 - Psest_0495 0.18 +1.0 549,668 - Psest_0495 0.18 +0.3 549,832 + Psest_0495 0.29 +1.6 549,832 + Psest_0495 0.29 -1.0 549,832 + Psest_0495 0.29 -2.4 549,832 + Psest_0495 0.29 +1.4 549,832 + Psest_0495 0.29 +0.9 550,064 + Psest_0495 0.44 -0.3 550,064 + Psest_0495 0.44 +0.0 550,064 + Psest_0495 0.44 -0.9 550,064 + Psest_0495 0.44 -1.2 550,065 - Psest_0495 0.44 -0.5 550,065 - Psest_0495 0.44 +0.9 550,065 - Psest_0495 0.44 +0.3
Or see this region's nucleotide sequence