Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0405 and Psest_0406 overlap by 41 nucleotides Psest_0406 and Psest_0407 are separated by 83 nucleotides Psest_0407 and Psest_0408 are separated by 135 nucleotides
Psest_0405: Psest_0405 - Phytoene/squalene synthetase, at 440,735 to 441,661
_0405
Psest_0406: Psest_0406 - Fatty acid hydroxylase superfamily., at 441,621 to 442,154
_0406
Psest_0407: Psest_0407 - Dioxygenases related to 2-nitropropane dioxygenase, at 442,238 to 443,281
_0407
Psest_0408: Psest_0408 - Protein involved in catabolism of external DNA, at 443,417 to 444,265
_0408
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 441.291 kb on - strand, within Psest_0405 at 441.349 kb on - strand, within Psest_0405 at 441.407 kb on + strand, within Psest_0405 at 441.411 kb on - strand, within Psest_0405 at 441.791 kb on + strand, within Psest_0406 at 441.838 kb on + strand, within Psest_0406 at 441.839 kb on - strand, within Psest_0406 at 441.839 kb on - strand, within Psest_0406 at 441.886 kb on + strand, within Psest_0406 at 441.886 kb on + strand, within Psest_0406 at 441.898 kb on + strand, within Psest_0406 at 441.994 kb on + strand, within Psest_0406 at 441.994 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.137 kb on - strand at 442.154 kb on + strand at 442.154 kb on + strand at 442.155 kb on - strand at 442.155 kb on - strand at 442.231 kb on + strand at 442.495 kb on + strand, within Psest_0407 at 442.566 kb on + strand, within Psest_0407 at 442.577 kb on + strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.583 kb on + strand, within Psest_0407 at 442.584 kb on - strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.092 kb on - strand, within Psest_0407 at 443.325 kb on + strand at 443.487 kb on + strand at 443.556 kb on - strand, within Psest_0408 at 443.584 kb on + strand, within Psest_0408 at 443.655 kb on - strand, within Psest_0408 at 443.700 kb on - strand, within Psest_0408 at 443.953 kb on + strand, within Psest_0408 at 443.954 kb on - strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.036 kb on - strand, within Psest_0408 at 444.253 kb on + strand at 444.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2 remove 441,291 - Psest_0405 0.60 +0.2 441,349 - Psest_0405 0.66 -0.0 441,407 + Psest_0405 0.72 -0.3 441,411 - Psest_0405 0.73 -0.5 441,791 + Psest_0406 0.32 -0.8 441,838 + Psest_0406 0.41 -0.4 441,839 - Psest_0406 0.41 -0.6 441,839 - Psest_0406 0.41 -0.3 441,886 + Psest_0406 0.50 +1.0 441,886 + Psest_0406 0.50 -0.4 441,898 + Psest_0406 0.52 -1.4 441,994 + Psest_0406 0.70 +1.1 441,994 + Psest_0406 0.70 +1.0 442,075 + Psest_0406 0.85 +0.8 442,075 + Psest_0406 0.85 +0.5 442,075 + Psest_0406 0.85 -0.8 442,075 + Psest_0406 0.85 -1.4 442,075 + Psest_0406 0.85 +0.2 442,075 + Psest_0406 0.85 +0.5 442,075 + Psest_0406 0.85 +1.0 442,075 + Psest_0406 0.85 +0.2 442,075 + Psest_0406 0.85 +1.0 442,075 + Psest_0406 0.85 +1.0 442,075 + Psest_0406 0.85 +0.4 442,075 + Psest_0406 0.85 +0.4 442,075 + Psest_0406 0.85 +1.3 442,076 - Psest_0406 0.85 +0.6 442,076 - Psest_0406 0.85 -1.3 442,076 - Psest_0406 0.85 +1.0 442,076 - Psest_0406 0.85 -2.6 442,076 - Psest_0406 0.85 +0.8 442,076 - Psest_0406 0.85 -0.0 442,076 - Psest_0406 0.85 +0.6 442,076 - Psest_0406 0.85 +2.9 442,076 - Psest_0406 0.85 +0.1 442,076 - Psest_0406 0.85 -1.3 442,076 - Psest_0406 0.85 +0.5 442,076 - Psest_0406 0.85 -0.4 442,076 - Psest_0406 0.85 -0.4 442,137 - -1.7 442,154 + +0.2 442,154 + +2.5 442,155 - +1.1 442,155 - +1.2 442,231 + -0.8 442,495 + Psest_0407 0.25 +0.2 442,566 + Psest_0407 0.31 -0.5 442,577 + Psest_0407 0.32 +1.6 442,578 - Psest_0407 0.33 +1.5 442,578 - Psest_0407 0.33 +0.1 442,578 - Psest_0407 0.33 +0.2 442,578 - Psest_0407 0.33 -2.8 442,583 + Psest_0407 0.33 -0.4 442,584 - Psest_0407 0.33 +0.2 443,091 + Psest_0407 0.82 +1.7 443,091 + Psest_0407 0.82 +2.6 443,091 + Psest_0407 0.82 -0.3 443,092 - Psest_0407 0.82 +2.1 443,325 + +0.9 443,487 + -1.0 443,556 - Psest_0408 0.16 -0.9 443,584 + Psest_0408 0.20 -0.4 443,655 - Psest_0408 0.28 -0.9 443,700 - Psest_0408 0.33 +2.3 443,953 + Psest_0408 0.63 +0.6 443,954 - Psest_0408 0.63 +0.6 444,035 + Psest_0408 0.73 -0.4 444,035 + Psest_0408 0.73 +0.3 444,036 - Psest_0408 0.73 +0.4 444,253 + +0.3 444,254 - -0.7
Or see this region's nucleotide sequence