Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0293 and Psest_0294 overlap by 4 nucleotides Psest_0294 and Psest_0295 are separated by 63 nucleotides Psest_0295 and Psest_0296 are separated by 87 nucleotides
Psest_0293: Psest_0293 - RNAse H-fold protein YqgF, at 308,103 to 308,531
_0293
Psest_0294: Psest_0294 - Putative transcriptional regulator, at 308,528 to 309,097
_0294
Psest_0295: Psest_0295 - TonB family C-terminal domain, at 309,161 to 310,054
_0295
Psest_0296: Psest_0296 - glutathione synthetase, prokaryotic, at 310,142 to 311,092
_0296
Position (kb) 309
310
311 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 308.607 kb on + strand, within Psest_0294 at 309.006 kb on + strand, within Psest_0294 at 309.006 kb on + strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.104 kb on + strand at 309.104 kb on + strand at 309.109 kb on + strand at 310.257 kb on + strand, within Psest_0296 at 310.257 kb on + strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.268 kb on + strand, within Psest_0296 at 310.491 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.800 kb on + strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.960 kb on - strand, within Psest_0296 at 310.978 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2 remove 308,607 + Psest_0294 0.14 -1.8 309,006 + Psest_0294 0.84 -0.4 309,006 + Psest_0294 0.84 +0.6 309,007 - Psest_0294 0.84 -0.4 309,007 - Psest_0294 0.84 +1.1 309,007 - Psest_0294 0.84 -1.6 309,007 - Psest_0294 0.84 -0.9 309,007 - Psest_0294 0.84 -0.4 309,007 - Psest_0294 0.84 -0.1 309,007 - Psest_0294 0.84 +1.0 309,007 - Psest_0294 0.84 +0.6 309,104 + +2.4 309,104 + -2.2 309,109 + -2.9 310,257 + Psest_0296 0.12 -3.0 310,257 + Psest_0296 0.12 -1.4 310,258 - Psest_0296 0.12 -1.2 310,258 - Psest_0296 0.12 -3.0 310,258 - Psest_0296 0.12 -2.7 310,258 - Psest_0296 0.12 -1.4 310,268 + Psest_0296 0.13 -5.9 310,491 + Psest_0296 0.37 -1.8 310,791 + Psest_0296 0.68 -5.0 310,791 + Psest_0296 0.68 -2.2 310,791 + Psest_0296 0.68 -0.7 310,791 + Psest_0296 0.68 -3.7 310,800 + Psest_0296 0.69 -0.4 310,801 - Psest_0296 0.69 +0.6 310,801 - Psest_0296 0.69 -0.7 310,801 - Psest_0296 0.69 -1.4 310,801 - Psest_0296 0.69 -0.4 310,806 + Psest_0296 0.70 -0.7 310,806 + Psest_0296 0.70 -3.7 310,806 + Psest_0296 0.70 -3.0 310,806 + Psest_0296 0.70 -2.0 310,806 + Psest_0296 0.70 -4.8 310,806 + Psest_0296 0.70 -1.3 310,807 - Psest_0296 0.70 -1.4 310,807 - Psest_0296 0.70 -1.8 310,807 - Psest_0296 0.70 -1.8 310,960 - Psest_0296 0.86 -1.0 310,978 + Psest_0296 0.88 -3.1 310,980 + Psest_0296 0.88 -2.6 310,980 + Psest_0296 0.88 -4.7 310,980 + Psest_0296 0.88 -4.1 310,980 + Psest_0296 0.88 -0.0 310,980 + Psest_0296 0.88 -1.8 310,980 + Psest_0296 0.88 -3.9 310,980 + Psest_0296 0.88 -4.0 310,981 - Psest_0296 0.88 -2.3 310,981 - Psest_0296 0.88 -2.2 310,981 - Psest_0296 0.88 -2.4 310,981 - Psest_0296 0.88 -1.4 310,981 - Psest_0296 0.88 -5.0 310,981 - Psest_0296 0.88 -4.3 310,981 - Psest_0296 0.88 -4.0 310,981 - Psest_0296 0.88 -1.0 310,981 - Psest_0296 0.88 -4.0 310,981 - Psest_0296 0.88 -4.0 310,981 - Psest_0296 0.88 +1.6
Or see this region's nucleotide sequence