Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0214 and Psest_0215 are separated by 130 nucleotides Psest_0215 and Psest_0216 are separated by 0 nucleotides
Psest_0214: Psest_0214 - exodeoxyribonuclease V, alpha subunit, at 220,244 to 222,091
_0214
Psest_0215: Psest_0215 - hypothetical protein, at 222,222 to 222,665
_0215
Psest_0216: Psest_0216 - Predicted permeases, at 222,666 to 223,574
_0216
Position (kb) 222
223 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 221.888 kb on + strand, within Psest_0214 at 222.244 kb on + strand at 222.245 kb on - strand at 222.287 kb on + strand, within Psest_0215 at 222.342 kb on + strand, within Psest_0215 at 222.342 kb on + strand, within Psest_0215 at 222.343 kb on - strand, within Psest_0215 at 222.343 kb on - strand, within Psest_0215 at 222.343 kb on - strand, within Psest_0215 at 222.345 kb on + strand, within Psest_0215 at 222.345 kb on + strand, within Psest_0215 at 222.345 kb on + strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.346 kb on - strand, within Psest_0215 at 222.382 kb on - strand, within Psest_0215 at 222.484 kb on + strand, within Psest_0215 at 222.501 kb on + strand, within Psest_0215 at 222.781 kb on + strand, within Psest_0216 at 222.781 kb on + strand at 222.781 kb on + strand, within Psest_0216 at 222.782 kb on - strand, within Psest_0216 at 222.937 kb on - strand, within Psest_0216 at 223.255 kb on + strand, within Psest_0216 at 223.255 kb on + strand, within Psest_0216 at 223.255 kb on + strand, within Psest_0216 at 223.255 kb on + strand, within Psest_0216 at 223.256 kb on - strand, within Psest_0216 at 223.256 kb on - strand, within Psest_0216 at 223.424 kb on + strand, within Psest_0216 at 223.457 kb on - strand, within Psest_0216 at 223.457 kb on - strand, within Psest_0216 at 223.457 kb on - strand, within Psest_0216 at 223.457 kb on - strand, within Psest_0216 at 223.457 kb on - strand, within Psest_0216 at 223.519 kb on + strand at 223.588 kb on + strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.656 kb on + strand at 223.656 kb on + strand at 223.657 kb on - strand at 223.657 kb on - strand at 223.657 kb on - strand at 223.657 kb on - strand at 223.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2 remove 221,888 + Psest_0214 0.89 -1.1 222,244 + +1.0 222,245 - +0.2 222,287 + Psest_0215 0.15 -0.1 222,342 + Psest_0215 0.27 -2.9 222,342 + Psest_0215 0.27 -2.7 222,343 - Psest_0215 0.27 -1.7 222,343 - Psest_0215 0.27 -0.1 222,343 - Psest_0215 0.27 +0.5 222,345 + Psest_0215 0.28 +1.7 222,345 + Psest_0215 0.28 +0.5 222,345 + Psest_0215 0.28 -0.7 222,346 - Psest_0215 0.28 +0.5 222,346 - Psest_0215 0.28 -0.0 222,346 - Psest_0215 0.28 -0.3 222,346 - Psest_0215 0.28 -0.5 222,346 - Psest_0215 0.28 +0.5 222,346 - Psest_0215 0.28 -1.5 222,346 - Psest_0215 0.28 -0.5 222,346 - Psest_0215 0.28 -0.2 222,346 - Psest_0215 0.28 -1.2 222,382 - Psest_0215 0.36 -1.1 222,484 + Psest_0215 0.59 -1.1 222,501 + Psest_0215 0.63 -0.3 222,781 + Psest_0216 0.13 +4.5 222,781 + -4.0 222,781 + Psest_0216 0.13 -0.7 222,782 - Psest_0216 0.13 +1.1 222,937 - Psest_0216 0.30 +0.6 223,255 + Psest_0216 0.65 +0.6 223,255 + Psest_0216 0.65 -1.8 223,255 + Psest_0216 0.65 +0.5 223,255 + Psest_0216 0.65 -1.9 223,256 - Psest_0216 0.65 +1.2 223,256 - Psest_0216 0.65 +0.8 223,424 + Psest_0216 0.83 -1.3 223,457 - Psest_0216 0.87 -0.9 223,457 - Psest_0216 0.87 +0.3 223,457 - Psest_0216 0.87 -0.5 223,457 - Psest_0216 0.87 -1.1 223,457 - Psest_0216 0.87 -0.9 223,519 + -0.3 223,588 + -1.9 223,589 - -0.7 223,589 - -0.7 223,589 - -0.0 223,656 + -1.4 223,656 + +4.5 223,657 - -0.4 223,657 - +0.5 223,657 - -1.1 223,657 - -1.7 223,657 - +1.3
Or see this region's nucleotide sequence