Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0176

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0175 and Psest_0176 are separated by 1 nucleotidesPsest_0176 and Psest_0177 are separated by 23 nucleotidesPsest_0177 and Psest_0178 overlap by 1 nucleotides Psest_0175: Psest_0175 - Xaa-Pro aminopeptidase, at 168,055 to 169,389 _0175 Psest_0176: Psest_0176 - 2-polyprenyl-6-methoxyphenol 4-hydroxylase, at 169,391 to 170,569 _0176 Psest_0177: Psest_0177 - hypothetical protein, at 170,593 to 171,081 _0177 Psest_0178: Psest_0178 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 171,081 to 172,301 _0178 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 168.436 kb on + strand, within Psest_0175at 168.437 kb on - strand, within Psest_0175at 168.440 kb on - strand, within Psest_0175at 168.784 kb on + strand, within Psest_0175at 168.856 kb on + strand, within Psest_0175at 168.877 kb on - strand, within Psest_0175at 168.933 kb on - strand, within Psest_0175at 168.963 kb on + strand, within Psest_0175at 169.084 kb on + strand, within Psest_0175at 169.096 kb on + strand, within Psest_0175at 169.096 kb on + strand, within Psest_0175at 169.096 kb on + strand, within Psest_0175at 169.096 kb on + strand, within Psest_0175at 169.096 kb on + strand, within Psest_0175at 169.096 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.216 kb on + strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.217 kb on - strand, within Psest_0175at 169.218 kb on + strand, within Psest_0175at 170.563 kb on - strandat 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.688 kb on + strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.689 kb on - strand, within Psest_0177at 170.717 kb on + strand, within Psest_0177at 170.718 kb on - strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.749 kb on + strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.750 kb on - strand, within Psest_0177at 170.779 kb on + strand, within Psest_0177at 170.780 kb on - strand, within Psest_0177at 170.780 kb on - strand, within Psest_0177at 170.780 kb on - strand, within Psest_0177at 170.836 kb on + strand, within Psest_0177at 170.836 kb on + strand, within Psest_0177at 170.836 kb on + strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.837 kb on - strand, within Psest_0177at 170.896 kb on + strand, within Psest_0177at 170.897 kb on - strand, within Psest_0177at 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.037 kb on + strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.038 kb on - strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.041 kb on + strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strandat 171.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2
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168,436 + Psest_0175 0.29 -1.1
168,437 - Psest_0175 0.29 -0.5
168,440 - Psest_0175 0.29 +0.5
168,784 + Psest_0175 0.55 -1.1
168,856 + Psest_0175 0.60 -2.1
168,877 - Psest_0175 0.62 -0.5
168,933 - Psest_0175 0.66 -2.5
168,963 + Psest_0175 0.68 -0.2
169,084 + Psest_0175 0.77 -0.1
169,096 + Psest_0175 0.78 -1.1
169,096 + Psest_0175 0.78 -0.1
169,096 + Psest_0175 0.78 -0.1
169,096 + Psest_0175 0.78 -0.8
169,096 + Psest_0175 0.78 -0.9
169,096 + Psest_0175 0.78 -1.3
169,216 + Psest_0175 0.87 +1.5
169,216 + Psest_0175 0.87 +0.8
169,216 + Psest_0175 0.87 -1.2
169,216 + Psest_0175 0.87 -0.1
169,216 + Psest_0175 0.87 -1.1
169,216 + Psest_0175 0.87 -1.1
169,216 + Psest_0175 0.87 -3.6
169,216 + Psest_0175 0.87 -1.5
169,216 + Psest_0175 0.87 -1.5
169,217 - Psest_0175 0.87 -0.8
169,217 - Psest_0175 0.87 -1.8
169,217 - Psest_0175 0.87 +0.5
169,217 - Psest_0175 0.87 +1.5
169,217 - Psest_0175 0.87 -0.5
169,217 - Psest_0175 0.87 -0.5
169,217 - Psest_0175 0.87 -1.8
169,217 - Psest_0175 0.87 -2.1
169,217 - Psest_0175 0.87 -1.5
169,217 - Psest_0175 0.87 -1.1
169,217 - Psest_0175 0.87 +0.5
169,217 - Psest_0175 0.87 -1.1
169,217 - Psest_0175 0.87 +0.5
169,217 - Psest_0175 0.87 -0.5
169,217 - Psest_0175 0.87 +0.5
169,217 - Psest_0175 0.87 +2.1
169,217 - Psest_0175 0.87 -0.5
169,218 + Psest_0175 0.87 -0.5
170,563 - -0.5
170,688 + Psest_0177 0.19 -1.5
170,688 + Psest_0177 0.19 -0.4
170,688 + Psest_0177 0.19 +0.0
170,688 + Psest_0177 0.19 -0.6
170,688 + Psest_0177 0.19 +1.3
170,688 + Psest_0177 0.19 -0.5
170,688 + Psest_0177 0.19 -0.5
170,688 + Psest_0177 0.19 +0.5
170,688 + Psest_0177 0.19 -1.4
170,688 + Psest_0177 0.19 -1.1
170,688 + Psest_0177 0.19 -0.4
170,688 + Psest_0177 0.19 +1.5
170,688 + Psest_0177 0.19 +0.7
170,689 - Psest_0177 0.20 -0.7
170,689 - Psest_0177 0.20 -0.9
170,689 - Psest_0177 0.20 -1.2
170,689 - Psest_0177 0.20 -1.5
170,689 - Psest_0177 0.20 -0.1
170,689 - Psest_0177 0.20 -0.6
170,689 - Psest_0177 0.20 -0.7
170,689 - Psest_0177 0.20 +0.6
170,689 - Psest_0177 0.20 -0.8
170,689 - Psest_0177 0.20 -0.1
170,689 - Psest_0177 0.20 -1.1
170,689 - Psest_0177 0.20 -0.4
170,717 + Psest_0177 0.25 -0.9
170,718 - Psest_0177 0.26 +1.0
170,749 + Psest_0177 0.32 -0.3
170,749 + Psest_0177 0.32 -2.7
170,749 + Psest_0177 0.32 -0.6
170,749 + Psest_0177 0.32 +0.3
170,749 + Psest_0177 0.32 -1.4
170,749 + Psest_0177 0.32 +0.1
170,750 - Psest_0177 0.32 -1.1
170,750 - Psest_0177 0.32 -1.5
170,750 - Psest_0177 0.32 -1.1
170,750 - Psest_0177 0.32 -0.3
170,750 - Psest_0177 0.32 +1.1
170,750 - Psest_0177 0.32 +0.3
170,779 + Psest_0177 0.38 -0.5
170,780 - Psest_0177 0.38 +0.4
170,780 - Psest_0177 0.38 -2.4
170,780 - Psest_0177 0.38 -0.4
170,836 + Psest_0177 0.50 +0.1
170,836 + Psest_0177 0.50 +0.2
170,836 + Psest_0177 0.50 -0.0
170,837 - Psest_0177 0.50 -1.7
170,837 - Psest_0177 0.50 -0.3
170,837 - Psest_0177 0.50 -0.4
170,837 - Psest_0177 0.50 -0.6
170,837 - Psest_0177 0.50 +0.2
170,837 - Psest_0177 0.50 -1.3
170,896 + Psest_0177 0.62 -1.1
170,897 - Psest_0177 0.62 -1.0
171,037 + +5.4
171,037 + +2.3
171,037 + -2.3
171,037 + -1.8
171,037 + -0.6
171,037 + -0.9
171,037 + -0.3
171,037 + +0.0
171,038 - +0.1
171,038 - -1.3
171,038 - +0.5
171,038 - -1.0
171,038 - -1.5
171,038 - +1.0
171,038 - -1.6
171,038 - -0.5
171,038 - +0.4
171,041 + -1.8
171,041 + +0.3
171,041 + -0.4
171,041 + +0.5
171,041 + -1.5
171,042 - +0.1
171,042 - -1.8
171,042 - -1.2
171,042 - +0.1
171,042 - -1.3
171,042 - -0.9

Or see this region's nucleotide sequence