Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0135

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0134 and Psest_0135 are separated by 378 nucleotidesPsest_0135 and Psest_0136 are separated by 109 nucleotidesPsest_0136 and Psest_0137 overlap by 4 nucleotides Psest_0134: Psest_0134 - type VI secretion-associated protein, VC_A0119 family, at 132,808 to 134,370 _0134 Psest_0135: Psest_0135 - Uncharacterized enzymes related to aldose 1-epimerase, at 134,749 to 135,651 _0135 Psest_0136: Psest_0136 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 135,761 to 136,450 _0136 Psest_0137: Psest_0137 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 136,447 to 137,142 _0137 Position (kb) 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 133.943 kb on - strand, within Psest_0134at 134.069 kb on + strand, within Psest_0134at 134.083 kb on + strand, within Psest_0134at 134.084 kb on - strand, within Psest_0134at 134.084 kb on - strand, within Psest_0134at 134.084 kb on - strand, within Psest_0134at 134.420 kb on + strandat 134.420 kb on + strandat 134.421 kb on - strandat 134.421 kb on - strandat 134.424 kb on + strandat 134.427 kb on + strandat 134.428 kb on - strandat 134.428 kb on - strandat 134.486 kb on + strandat 134.487 kb on - strandat 134.519 kb on + strandat 134.519 kb on + strandat 134.520 kb on - strandat 134.520 kb on - strandat 134.636 kb on + strandat 134.656 kb on - strandat 134.670 kb on + strandat 134.670 kb on + strandat 134.670 kb on + strandat 134.682 kb on + strandat 134.682 kb on + strandat 134.682 kb on + strandat 134.682 kb on + strandat 134.682 kb on + strandat 134.682 kb on + strandat 134.683 kb on - strandat 134.686 kb on + strandat 134.686 kb on + strandat 134.686 kb on + strandat 134.686 kb on + strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.687 kb on - strandat 134.692 kb on + strandat 134.692 kb on + strandat 134.692 kb on + strandat 134.692 kb on + strandat 134.693 kb on - strandat 134.696 kb on + strandat 134.697 kb on - strandat 134.722 kb on - strandat 134.728 kb on - strandat 134.728 kb on - strandat 134.730 kb on - strandat 134.877 kb on - strand, within Psest_0135at 134.920 kb on + strand, within Psest_0135at 134.920 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.008 kb on + strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.009 kb on - strand, within Psest_0135at 135.081 kb on + strand, within Psest_0135at 135.089 kb on + strand, within Psest_0135at 135.090 kb on - strand, within Psest_0135at 135.090 kb on - strand, within Psest_0135at 135.090 kb on - strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.146 kb on + strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.147 kb on - strand, within Psest_0135at 135.168 kb on + strand, within Psest_0135at 135.169 kb on - strand, within Psest_0135at 135.361 kb on + strand, within Psest_0135at 135.362 kb on - strand, within Psest_0135at 135.398 kb on + strand, within Psest_0135at 135.399 kb on - strand, within Psest_0135at 135.399 kb on - strand, within Psest_0135at 135.543 kb on - strand, within Psest_0135at 135.598 kb on + strandat 135.599 kb on - strandat 135.664 kb on - strandat 135.843 kb on + strand, within Psest_0136at 135.843 kb on + strand, within Psest_0136at 135.843 kb on + strand, within Psest_0136at 135.843 kb on + strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.844 kb on - strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.882 kb on + strand, within Psest_0136at 135.883 kb on - strand, within Psest_0136at 135.984 kb on + strand, within Psest_0136at 135.985 kb on - strand, within Psest_0136at 136.124 kb on - strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.125 kb on + strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.126 kb on - strand, within Psest_0136at 136.182 kb on + strand, within Psest_0136at 136.230 kb on + strand, within Psest_0136at 136.230 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.233 kb on + strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.234 kb on - strand, within Psest_0136at 136.284 kb on + strand, within Psest_0136at 136.285 kb on - strand, within Psest_0136at 136.285 kb on - strand, within Psest_0136at 136.285 kb on - strand, within Psest_0136at 136.417 kb on + strandat 136.417 kb on + strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.418 kb on - strandat 136.500 kb on + strandat 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.532 kb on + strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.533 kb on - strand, within Psest_0137at 136.630 kb on + strand, within Psest_0137at 136.630 kb on + strand, within Psest_0137at 136.630 kb on + strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137at 136.631 kb on - strand, within Psest_0137

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample2
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133,943 - Psest_0134 0.73 +0.5
134,069 + Psest_0134 0.81 -1.1
134,083 + Psest_0134 0.82 -0.6
134,084 - Psest_0134 0.82 +0.5
134,084 - Psest_0134 0.82 -0.5
134,084 - Psest_0134 0.82 -0.3
134,420 + +1.3
134,420 + +0.5
134,421 - -0.7
134,421 - -1.0
134,424 + -0.5
134,427 + -0.1
134,428 - -0.6
134,428 - +0.3
134,486 + +0.3
134,487 - +0.1
134,519 + +0.3
134,519 + -0.5
134,520 - -0.2
134,520 - -0.3
134,636 + -0.8
134,656 - +2.1
134,670 + +0.8
134,670 + +0.5
134,670 + +1.3
134,682 + -0.3
134,682 + +0.5
134,682 + +0.3
134,682 + -0.9
134,682 + +0.2
134,682 + +0.7
134,683 - -0.1
134,686 + -1.1
134,686 + +0.8
134,686 + -0.5
134,686 + +1.7
134,687 - +0.3
134,687 - -1.1
134,687 - +0.6
134,687 - +1.5
134,687 - +0.8
134,687 - -1.2
134,687 - -0.1
134,687 - +0.5
134,687 - +1.6
134,692 + +2.4
134,692 + +0.5
134,692 + +1.5
134,692 + +2.3
134,693 - +1.5
134,696 + -0.5
134,697 - -2.3
134,722 - +0.1
134,728 - -1.1
134,728 - -3.9
134,730 - -0.4
134,877 - Psest_0135 0.14 -1.3
134,920 + Psest_0135 0.19 -0.3
134,920 + Psest_0135 0.19 +0.2
135,008 + Psest_0135 0.29 -0.7
135,008 + Psest_0135 0.29 -0.1
135,008 + Psest_0135 0.29 -0.8
135,008 + Psest_0135 0.29 +1.1
135,008 + Psest_0135 0.29 +1.9
135,008 + Psest_0135 0.29 -1.9
135,008 + Psest_0135 0.29 -1.1
135,008 + Psest_0135 0.29 -0.4
135,008 + Psest_0135 0.29 -1.8
135,008 + Psest_0135 0.29 -1.1
135,009 - Psest_0135 0.29 -1.0
135,009 - Psest_0135 0.29 +0.1
135,009 - Psest_0135 0.29 -0.0
135,009 - Psest_0135 0.29 +1.2
135,009 - Psest_0135 0.29 +0.4
135,009 - Psest_0135 0.29 +1.3
135,009 - Psest_0135 0.29 -3.4
135,009 - Psest_0135 0.29 +1.6
135,081 + Psest_0135 0.37 -0.6
135,089 + Psest_0135 0.38 -0.5
135,090 - Psest_0135 0.38 -1.6
135,090 - Psest_0135 0.38 +0.7
135,090 - Psest_0135 0.38 +0.8
135,146 + Psest_0135 0.44 -1.1
135,146 + Psest_0135 0.44 -0.3
135,146 + Psest_0135 0.44 +0.5
135,146 + Psest_0135 0.44 -0.5
135,146 + Psest_0135 0.44 +0.7
135,146 + Psest_0135 0.44 +1.3
135,146 + Psest_0135 0.44 +0.3
135,146 + Psest_0135 0.44 -0.7
135,146 + Psest_0135 0.44 +0.9
135,147 - Psest_0135 0.44 -0.8
135,147 - Psest_0135 0.44 +1.8
135,147 - Psest_0135 0.44 -1.7
135,147 - Psest_0135 0.44 -1.1
135,147 - Psest_0135 0.44 +1.5
135,168 + Psest_0135 0.46 -0.6
135,169 - Psest_0135 0.47 +1.0
135,361 + Psest_0135 0.68 +2.1
135,362 - Psest_0135 0.68 +1.0
135,398 + Psest_0135 0.72 -1.6
135,399 - Psest_0135 0.72 -0.7
135,399 - Psest_0135 0.72 -0.5
135,543 - Psest_0135 0.88 -0.5
135,598 + -0.2
135,599 - -0.0
135,664 - -0.5
135,843 + Psest_0136 0.12 -0.1
135,843 + Psest_0136 0.12 -1.1
135,843 + Psest_0136 0.12 +0.0
135,843 + Psest_0136 0.12 +1.9
135,844 - Psest_0136 0.12 -1.8
135,844 - Psest_0136 0.12 -0.1
135,844 - Psest_0136 0.12 -0.5
135,844 - Psest_0136 0.12 -0.5
135,882 + Psest_0136 0.18 +1.3
135,882 + Psest_0136 0.18 +0.6
135,882 + Psest_0136 0.18 +0.6
135,882 + Psest_0136 0.18 +0.8
135,882 + Psest_0136 0.18 +0.5
135,883 - Psest_0136 0.18 -0.7
135,984 + Psest_0136 0.32 +0.6
135,985 - Psest_0136 0.32 +1.0
136,124 - Psest_0136 0.53 -0.2
136,125 + Psest_0136 0.53 +0.6
136,125 + Psest_0136 0.53 -1.2
136,125 + Psest_0136 0.53 +0.2
136,125 + Psest_0136 0.53 -0.1
136,125 + Psest_0136 0.53 +0.6
136,125 + Psest_0136 0.53 -0.3
136,125 + Psest_0136 0.53 +0.7
136,125 + Psest_0136 0.53 -0.3
136,125 + Psest_0136 0.53 -1.7
136,125 + Psest_0136 0.53 -0.3
136,125 + Psest_0136 0.53 -1.5
136,125 + Psest_0136 0.53 -2.5
136,125 + Psest_0136 0.53 -0.7
136,125 + Psest_0136 0.53 +0.0
136,125 + Psest_0136 0.53 +0.0
136,126 - Psest_0136 0.53 -0.3
136,126 - Psest_0136 0.53 -2.8
136,126 - Psest_0136 0.53 -0.2
136,126 - Psest_0136 0.53 -1.1
136,126 - Psest_0136 0.53 -0.8
136,126 - Psest_0136 0.53 -0.6
136,126 - Psest_0136 0.53 -0.5
136,126 - Psest_0136 0.53 -1.8
136,126 - Psest_0136 0.53 +0.5
136,182 + Psest_0136 0.61 +0.7
136,230 + Psest_0136 0.68 +0.5
136,230 + Psest_0136 0.68 +0.6
136,233 + Psest_0136 0.68 -0.2
136,233 + Psest_0136 0.68 -0.2
136,233 + Psest_0136 0.68 +1.8
136,233 + Psest_0136 0.68 +0.6
136,234 - Psest_0136 0.69 -2.3
136,234 - Psest_0136 0.69 -0.7
136,234 - Psest_0136 0.69 -1.5
136,234 - Psest_0136 0.69 -1.2
136,234 - Psest_0136 0.69 -1.1
136,284 + Psest_0136 0.76 +4.2
136,285 - Psest_0136 0.76 +0.7
136,285 - Psest_0136 0.76 -0.9
136,285 - Psest_0136 0.76 -0.2
136,417 + +1.7
136,417 + -0.6
136,418 - +0.4
136,418 - -0.6
136,418 - -0.2
136,418 - +1.3
136,418 - +0.7
136,418 - +0.1
136,500 + +0.1
136,532 + Psest_0137 0.12 +1.2
136,532 + Psest_0137 0.12 -1.5
136,532 + Psest_0137 0.12 -1.0
136,532 + Psest_0137 0.12 +2.1
136,532 + Psest_0137 0.12 +1.1
136,533 - Psest_0137 0.12 +0.7
136,533 - Psest_0137 0.12 +0.1
136,533 - Psest_0137 0.12 +1.5
136,533 - Psest_0137 0.12 -0.3
136,630 + Psest_0137 0.26 +0.8
136,630 + Psest_0137 0.26 -0.2
136,630 + Psest_0137 0.26 +0.5
136,631 - Psest_0137 0.26 -0.3
136,631 - Psest_0137 0.26 -1.5
136,631 - Psest_0137 0.26 +0.9
136,631 - Psest_0137 0.26 -2.0

Or see this region's nucleotide sequence