Experiment: Lactate-nitrate; anaerobic; dichromate stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0827 and Psest_0828 are separated by 82 nucleotides Psest_0828 and Psest_0829 are separated by 401 nucleotides Psest_0829 and Psest_0830 are separated by 67 nucleotides
Psest_0827: Psest_0827 - Nitric oxide reductase large subunit, at 898,063 to 899,487
_0827
Psest_0828: Psest_0828 - Nitric oxide reductase activation protein, at 899,570 to 901,411
_0828
Psest_0829: Psest_0829 - hypothetical protein, at 901,813 to 902,004
_0829
Psest_0830: Psest_0830 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 902,072 to 902,755
_0830
Position (kb) 899
900
901
902 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 898.630 kb on + strand, within Psest_0827 at 898.630 kb on + strand, within Psest_0827 at 898.630 kb on + strand, within Psest_0827 at 898.630 kb on + strand, within Psest_0827 at 898.631 kb on - strand, within Psest_0827 at 898.631 kb on - strand, within Psest_0827 at 898.631 kb on - strand, within Psest_0827 at 898.631 kb on - strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.660 kb on + strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.661 kb on - strand, within Psest_0827 at 898.663 kb on + strand, within Psest_0827 at 898.663 kb on + strand, within Psest_0827 at 898.663 kb on + strand, within Psest_0827 at 898.664 kb on - strand, within Psest_0827 at 898.664 kb on - strand, within Psest_0827 at 898.664 kb on - strand, within Psest_0827 at 898.786 kb on + strand, within Psest_0827 at 898.786 kb on + strand, within Psest_0827 at 898.787 kb on - strand, within Psest_0827 at 898.787 kb on - strand, within Psest_0827 at 899.068 kb on + strand, within Psest_0827 at 899.068 kb on + strand, within Psest_0827 at 899.069 kb on - strand, within Psest_0827 at 899.069 kb on - strand, within Psest_0827 at 899.069 kb on - strand, within Psest_0827 at 899.069 kb on - strand, within Psest_0827 at 899.069 kb on - strand, within Psest_0827 at 899.069 kb on - strand, within Psest_0827 at 899.071 kb on + strand, within Psest_0827 at 899.071 kb on + strand, within Psest_0827 at 899.071 kb on + strand, within Psest_0827 at 899.071 kb on + strand, within Psest_0827 at 899.119 kb on + strand, within Psest_0827 at 899.119 kb on + strand, within Psest_0827 at 899.119 kb on + strand, within Psest_0827 at 899.120 kb on - strand, within Psest_0827 at 899.120 kb on - strand, within Psest_0827 at 899.120 kb on - strand, within Psest_0827 at 899.129 kb on - strand, within Psest_0827 at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.422 kb on + strand at 899.423 kb on - strand at 899.428 kb on + strand at 899.429 kb on - strand at 899.429 kb on - strand at 899.429 kb on - strand at 899.462 kb on + strand at 899.578 kb on + strand at 899.578 kb on + strand at 899.868 kb on - strand, within Psest_0828 at 900.990 kb on + strand, within Psest_0828 at 901.085 kb on + strand, within Psest_0828 at 901.086 kb on - strand, within Psest_0828 at 901.088 kb on + strand, within Psest_0828 at 901.088 kb on + strand, within Psest_0828 at 901.088 kb on + strand, within Psest_0828 at 901.089 kb on - strand, within Psest_0828 at 901.089 kb on - strand, within Psest_0828 at 901.089 kb on - strand, within Psest_0828 at 901.089 kb on - strand, within Psest_0828 at 901.089 kb on - strand, within Psest_0828 at 901.089 kb on - strand, within Psest_0828 at 901.203 kb on - strand, within Psest_0828 at 901.203 kb on - strand, within Psest_0828 at 901.316 kb on + strand at 901.316 kb on + strand at 901.316 kb on + strand at 901.316 kb on + strand at 901.316 kb on + strand at 901.388 kb on + strand at 901.388 kb on + strand at 901.409 kb on + strand at 901.510 kb on - strand at 901.549 kb on + strand at 901.550 kb on - strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.569 kb on + strand at 901.570 kb on - strand at 901.570 kb on - strand at 901.570 kb on - strand at 901.570 kb on - strand at 901.570 kb on - strand at 901.570 kb on - strand at 901.570 kb on - strand at 901.592 kb on + strand at 901.592 kb on + strand at 901.592 kb on + strand at 901.592 kb on + strand at 901.592 kb on + strand at 901.592 kb on + strand at 901.593 kb on - strand at 901.593 kb on - strand at 901.593 kb on - strand at 901.593 kb on - strand at 901.593 kb on - strand at 901.686 kb on - strand at 901.686 kb on - strand at 901.720 kb on - strand at 901.793 kb on - strand at 901.823 kb on + strand at 901.824 kb on - strand at 901.824 kb on - strand at 901.824 kb on - strand at 902.131 kb on + strand at 902.132 kb on - strand at 902.273 kb on + strand, within Psest_0830 at 902.273 kb on + strand, within Psest_0830 at 902.273 kb on + strand, within Psest_0830 at 902.273 kb on + strand, within Psest_0830 at 902.274 kb on - strand, within Psest_0830 at 902.278 kb on - strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.409 kb on + strand, within Psest_0830 at 902.410 kb on - strand, within Psest_0830 at 902.410 kb on - strand, within Psest_0830 at 902.410 kb on - strand, within Psest_0830
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample1 remove 898,630 + Psest_0827 0.40 -2.1 898,630 + Psest_0827 0.40 -2.1 898,630 + Psest_0827 0.40 -2.1 898,630 + Psest_0827 0.40 +0.5 898,631 - Psest_0827 0.40 -2.8 898,631 - Psest_0827 0.40 -4.0 898,631 - Psest_0827 0.40 -2.5 898,631 - Psest_0827 0.40 -1.1 898,660 + Psest_0827 0.42 -1.1 898,660 + Psest_0827 0.42 -0.6 898,660 + Psest_0827 0.42 -0.5 898,660 + Psest_0827 0.42 -4.5 898,660 + Psest_0827 0.42 -1.6 898,660 + Psest_0827 0.42 -2.8 898,660 + Psest_0827 0.42 -1.2 898,660 + Psest_0827 0.42 -0.6 898,660 + Psest_0827 0.42 -4.6 898,660 + Psest_0827 0.42 -4.5 898,660 + Psest_0827 0.42 -2.4 898,660 + Psest_0827 0.42 -2.8 898,660 + Psest_0827 0.42 -2.9 898,660 + Psest_0827 0.42 -3.8 898,660 + Psest_0827 0.42 -2.5 898,660 + Psest_0827 0.42 -0.5 898,660 + Psest_0827 0.42 -2.5 898,660 + Psest_0827 0.42 -2.3 898,660 + Psest_0827 0.42 +1.9 898,660 + Psest_0827 0.42 -1.6 898,661 - Psest_0827 0.42 -1.7 898,661 - Psest_0827 0.42 -2.9 898,661 - Psest_0827 0.42 -3.2 898,661 - Psest_0827 0.42 +0.3 898,661 - Psest_0827 0.42 -2.0 898,661 - Psest_0827 0.42 -2.3 898,661 - Psest_0827 0.42 -0.8 898,661 - Psest_0827 0.42 -1.3 898,661 - Psest_0827 0.42 -2.9 898,661 - Psest_0827 0.42 +0.2 898,661 - Psest_0827 0.42 -3.0 898,661 - Psest_0827 0.42 -2.5 898,661 - Psest_0827 0.42 -2.7 898,663 + Psest_0827 0.42 -1.5 898,663 + Psest_0827 0.42 -2.6 898,663 + Psest_0827 0.42 -2.9 898,664 - Psest_0827 0.42 -3.1 898,664 - Psest_0827 0.42 -0.5 898,664 - Psest_0827 0.42 -2.1 898,786 + Psest_0827 0.51 -3.6 898,786 + Psest_0827 0.51 -2.6 898,787 - Psest_0827 0.51 -1.7 898,787 - Psest_0827 0.51 -1.8 899,068 + Psest_0827 0.71 -1.2 899,068 + Psest_0827 0.71 -1.9 899,069 - Psest_0827 0.71 -0.5 899,069 - Psest_0827 0.71 -2.7 899,069 - Psest_0827 0.71 +0.5 899,069 - Psest_0827 0.71 -2.3 899,069 - Psest_0827 0.71 -3.8 899,069 - Psest_0827 0.71 -1.5 899,071 + Psest_0827 0.71 +0.5 899,071 + Psest_0827 0.71 -2.8 899,071 + Psest_0827 0.71 -2.3 899,071 + Psest_0827 0.71 -2.6 899,119 + Psest_0827 0.74 -0.6 899,119 + Psest_0827 0.74 -1.7 899,119 + Psest_0827 0.74 -2.9 899,120 - Psest_0827 0.74 -3.1 899,120 - Psest_0827 0.74 -2.8 899,120 - Psest_0827 0.74 -1.3 899,129 - Psest_0827 0.75 -2.1 899,422 + -1.5 899,422 + -0.7 899,422 + -3.2 899,422 + -0.2 899,422 + -0.7 899,423 - -1.1 899,428 + -0.2 899,429 - -0.5 899,429 - -0.5 899,429 - -2.1 899,462 + +0.2 899,578 + +1.1 899,578 + +0.1 899,868 - Psest_0828 0.16 -3.3 900,990 + Psest_0828 0.77 -2.9 901,085 + Psest_0828 0.82 -2.9 901,086 - Psest_0828 0.82 -1.6 901,088 + Psest_0828 0.82 -2.6 901,088 + Psest_0828 0.82 -2.5 901,088 + Psest_0828 0.82 -2.5 901,089 - Psest_0828 0.82 -1.2 901,089 - Psest_0828 0.82 -0.5 901,089 - Psest_0828 0.82 -2.2 901,089 - Psest_0828 0.82 -1.8 901,089 - Psest_0828 0.82 -0.1 901,089 - Psest_0828 0.82 -3.6 901,203 - Psest_0828 0.89 -2.1 901,203 - Psest_0828 0.89 -2.9 901,316 + -0.8 901,316 + -2.6 901,316 + -0.5 901,316 + -0.1 901,316 + -4.5 901,388 + -1.9 901,388 + -1.8 901,409 + +1.2 901,510 - +0.5 901,549 + -0.1 901,550 - +1.1 901,569 + +0.5 901,569 + -0.1 901,569 + -0.1 901,569 + +0.2 901,569 + +1.0 901,569 + -1.3 901,569 + +1.5 901,569 + -0.6 901,569 + -1.0 901,570 - +1.0 901,570 - +0.9 901,570 - +1.5 901,570 - +0.3 901,570 - +0.1 901,570 - -1.1 901,570 - +1.6 901,592 + -0.5 901,592 + +0.2 901,592 + -1.2 901,592 + +0.3 901,592 + +1.1 901,592 + +0.4 901,593 - +0.3 901,593 - -1.7 901,593 - +1.7 901,593 - -2.3 901,593 - -0.2 901,686 - +0.7 901,686 - -2.5 901,720 - +0.3 901,793 - +0.1 901,823 + -0.8 901,824 - -1.5 901,824 - +0.3 901,824 - +0.4 902,131 + -0.1 902,132 - +0.5 902,273 + Psest_0830 0.29 -3.3 902,273 + Psest_0830 0.29 +0.2 902,273 + Psest_0830 0.29 -1.3 902,273 + Psest_0830 0.29 -1.1 902,274 - Psest_0830 0.30 -2.3 902,278 - Psest_0830 0.30 -3.0 902,409 + Psest_0830 0.49 -1.6 902,409 + Psest_0830 0.49 -3.2 902,409 + Psest_0830 0.49 -1.3 902,409 + Psest_0830 0.49 -3.1 902,410 - Psest_0830 0.49 -2.1 902,410 - Psest_0830 0.49 -2.2 902,410 - Psest_0830 0.49 -0.5
Or see this region's nucleotide sequence