Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0798

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0796 and Psest_0797 are separated by 25 nucleotidesPsest_0797 and Psest_0798 are separated by 45 nucleotidesPsest_0798 and Psest_0799 are separated by 322 nucleotides Psest_0796: Psest_0796 - ABC-type transport system involved in multi-copper enzyme maturation, permease component, at 871,446 to 872,276 _0796 Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874 _0797 Psest_0798: Psest_0798 - twin arginine-targeting protein translocase, TatA/E family, at 872,920 to 873,102 _0798 Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615 _0799 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2 3at 871.929 kb on + strand, within Psest_0796at 871.929 kb on + strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 872.107 kb on - strand, within Psest_0796at 872.302 kb on - strandat 872.302 kb on - strandat 872.302 kb on - strandat 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.581 kb on + strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.582 kb on - strand, within Psest_0797at 872.653 kb on + strand, within Psest_0797at 872.653 kb on + strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.654 kb on - strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.656 kb on + strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.657 kb on - strand, within Psest_0797at 872.912 kb on - strandat 872.928 kb on + strandat 873.100 kb on + strandat 873.100 kb on + strandat 873.101 kb on - strandat 873.191 kb on - strandat 873.270 kb on + strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.320 kb on + strandat 873.320 kb on + strandat 873.320 kb on + strandat 873.328 kb on - strandat 873.334 kb on + strandat 873.334 kb on + strandat 873.335 kb on - strandat 873.335 kb on - strandat 873.335 kb on - strandat 873.335 kb on - strandat 873.335 kb on - strandat 873.335 kb on - strandat 873.351 kb on + strandat 873.388 kb on + strandat 873.388 kb on + strandat 873.388 kb on + strandat 873.388 kb on + strandat 873.389 kb on - strandat 873.389 kb on - strandat 873.389 kb on - strandat 873.389 kb on - strandat 873.432 kb on + strandat 873.432 kb on + strandat 873.433 kb on - strandat 873.457 kb on + strandat 873.853 kb on + strand, within Psest_0799at 873.853 kb on + strand, within Psest_0799at 873.854 kb on - strand, within Psest_0799at 873.854 kb on - strand, within Psest_0799

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample1
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871,929 + Psest_0796 0.58 -2.3
871,929 + Psest_0796 0.58 -0.2
871,930 - Psest_0796 0.58 -2.7
871,930 - Psest_0796 0.58 -0.4
871,930 - Psest_0796 0.58 -0.1
872,107 - Psest_0796 0.80 -2.7
872,302 - -0.8
872,302 - -1.1
872,302 - +2.5
872,581 + Psest_0797 0.49 +0.8
872,581 + Psest_0797 0.49 -1.8
872,581 + Psest_0797 0.49 +1.4
872,581 + Psest_0797 0.49 -1.4
872,581 + Psest_0797 0.49 +0.9
872,582 - Psest_0797 0.49 -0.0
872,582 - Psest_0797 0.49 +1.2
872,582 - Psest_0797 0.49 -0.5
872,582 - Psest_0797 0.49 +1.3
872,653 + Psest_0797 0.61 +0.5
872,653 + Psest_0797 0.61 -2.0
872,654 - Psest_0797 0.61 -0.1
872,654 - Psest_0797 0.61 -1.1
872,654 - Psest_0797 0.61 +0.5
872,654 - Psest_0797 0.61 -1.3
872,654 - Psest_0797 0.61 -1.5
872,656 + Psest_0797 0.62 -1.7
872,656 + Psest_0797 0.62 -0.9
872,656 + Psest_0797 0.62 -0.6
872,656 + Psest_0797 0.62 -0.1
872,656 + Psest_0797 0.62 -1.4
872,656 + Psest_0797 0.62 +0.5
872,656 + Psest_0797 0.62 +0.2
872,656 + Psest_0797 0.62 -0.9
872,656 + Psest_0797 0.62 -0.1
872,656 + Psest_0797 0.62 -1.1
872,657 - Psest_0797 0.62 +0.7
872,657 - Psest_0797 0.62 -0.2
872,657 - Psest_0797 0.62 -2.7
872,657 - Psest_0797 0.62 +0.1
872,657 - Psest_0797 0.62 +0.5
872,657 - Psest_0797 0.62 -0.1
872,657 - Psest_0797 0.62 -0.5
872,657 - Psest_0797 0.62 -0.1
872,657 - Psest_0797 0.62 -2.1
872,657 - Psest_0797 0.62 -1.5
872,657 - Psest_0797 0.62 -0.6
872,657 - Psest_0797 0.62 -0.7
872,657 - Psest_0797 0.62 +0.5
872,657 - Psest_0797 0.62 -1.0
872,657 - Psest_0797 0.62 -0.6
872,657 - Psest_0797 0.62 -1.1
872,912 - +0.4
872,928 + -0.1
873,100 + +0.3
873,100 + +0.8
873,101 - +0.9
873,191 - +0.7
873,270 + -1.8
873,271 - +3.0
873,271 - +0.5
873,271 - -1.0
873,320 + -1.3
873,320 + -0.5
873,320 + -1.8
873,328 - -0.9
873,334 + -1.1
873,334 + +1.1
873,335 - +0.5
873,335 - -1.8
873,335 - -0.5
873,335 - +0.1
873,335 - -0.5
873,335 - -0.2
873,351 + -0.5
873,388 + +0.3
873,388 + +0.2
873,388 + -0.1
873,388 + +0.2
873,389 - -1.4
873,389 - -0.9
873,389 - -0.1
873,389 - +1.1
873,432 + +0.8
873,432 + -2.3
873,433 - -1.5
873,457 + -1.1
873,853 + Psest_0799 0.36 +0.5
873,853 + Psest_0799 0.36 -1.8
873,854 - Psest_0799 0.36 -2.5
873,854 - Psest_0799 0.36 +0.8

Or see this region's nucleotide sequence