Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3090

Experiment: Lactate-nitrate; anaerobic; dichromate stress sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3088 and Psest_3089 are separated by 127 nucleotidesPsest_3089 and Psest_3090 overlap by 8 nucleotidesPsest_3090 and Psest_3091 are separated by 48 nucleotidesPsest_3091 and Psest_3092 overlap by 8 nucleotides Psest_3088: Psest_3088 - Protein of unknown function (DUF2905)., at 3,268,258 to 3,268,464 _3088 Psest_3089: Psest_3089 - pyridoxine 5'-phosphate synthase, at 3,268,592 to 3,269,338 _3089 Psest_3090: Psest_3090 - DNA repair protein RecO, at 3,269,331 to 3,270,020 _3090 Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980 _3091 Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662 _3092 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3268.475 kb on - strandat 3268.564 kb on - strandat 3269.589 kb on - strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.592 kb on + strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.593 kb on - strand, within Psest_3090at 3269.701 kb on + strand, within Psest_3090at 3269.701 kb on + strand, within Psest_3090at 3269.702 kb on - strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.767 kb on + strand, within Psest_3090at 3269.768 kb on - strand, within Psest_3090at 3269.768 kb on - strand, within Psest_3090at 3269.768 kb on - strand, within Psest_3090at 3269.983 kb on + strandat 3269.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample1
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3,268,475 - -0.8
3,268,564 - +0.8
3,269,589 - Psest_3090 0.37 -2.1
3,269,592 + Psest_3090 0.38 -2.8
3,269,592 + Psest_3090 0.38 -1.5
3,269,592 + Psest_3090 0.38 -0.8
3,269,592 + Psest_3090 0.38 -4.3
3,269,592 + Psest_3090 0.38 -0.5
3,269,593 - Psest_3090 0.38 -2.8
3,269,593 - Psest_3090 0.38 -3.5
3,269,593 - Psest_3090 0.38 -1.4
3,269,593 - Psest_3090 0.38 -2.1
3,269,593 - Psest_3090 0.38 -1.5
3,269,593 - Psest_3090 0.38 -3.3
3,269,593 - Psest_3090 0.38 -1.1
3,269,593 - Psest_3090 0.38 -1.4
3,269,593 - Psest_3090 0.38 -1.8
3,269,593 - Psest_3090 0.38 -3.1
3,269,593 - Psest_3090 0.38 -1.7
3,269,701 + Psest_3090 0.54 -0.6
3,269,701 + Psest_3090 0.54 -2.5
3,269,702 - Psest_3090 0.54 -1.1
3,269,767 + Psest_3090 0.63 -2.6
3,269,767 + Psest_3090 0.63 -2.5
3,269,767 + Psest_3090 0.63 -0.8
3,269,767 + Psest_3090 0.63 -1.7
3,269,767 + Psest_3090 0.63 -1.5
3,269,768 - Psest_3090 0.63 -2.6
3,269,768 - Psest_3090 0.63 -2.3
3,269,768 - Psest_3090 0.63 -1.5
3,269,983 + -1.1
3,269,984 - -1.6

Or see this region's nucleotide sequence