Experiment: Lactate-nitrate; anaerobic; dichromate stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2040 and Psest_2041 overlap by 4 nucleotides Psest_2041 and Psest_2042 overlap by 4 nucleotides Psest_2042 and Psest_2043 are separated by 18 nucleotides Psest_2043 and Psest_2044 overlap by 4 nucleotides
Psest_2040: Psest_2040 - alcohol ABC transporter, permease protein, at 2,161,136 to 2,161,927
_2040
Psest_2041: Psest_2041 - ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system, at 2,161,924 to 2,162,793
_2041
Psest_2042: Psest_2042 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,162,790 to 2,163,761
_2042
Psest_2043: Psest_2043 - Sel1 repeat., at 2,163,780 to 2,164,277
_2043
Psest_2044: Psest_2044 - ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system, at 2,164,274 to 2,165,461
_2044
Position (kb)
2162
2163
2164 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2161.812 kb on - strand, within Psest_2040 at 2161.896 kb on - strand at 2161.896 kb on - strand at 2161.927 kb on + strand at 2161.927 kb on + strand at 2161.928 kb on - strand at 2162.055 kb on + strand, within Psest_2041 at 2162.056 kb on - strand, within Psest_2041 at 2162.326 kb on + strand, within Psest_2041 at 2162.327 kb on - strand, within Psest_2041 at 2162.330 kb on - strand, within Psest_2041 at 2162.330 kb on - strand, within Psest_2041 at 2162.330 kb on - strand, within Psest_2041 at 2162.330 kb on - strand, within Psest_2041 at 2162.330 kb on - strand, within Psest_2041 at 2162.406 kb on + strand, within Psest_2041 at 2162.610 kb on + strand, within Psest_2041 at 2162.611 kb on - strand, within Psest_2041 at 2162.611 kb on - strand, within Psest_2041 at 2162.637 kb on - strand, within Psest_2041 at 2162.637 kb on - strand, within Psest_2041 at 2162.977 kb on + strand, within Psest_2042 at 2163.002 kb on + strand, within Psest_2042 at 2163.003 kb on - strand, within Psest_2042 at 2163.003 kb on - strand, within Psest_2042 at 2163.003 kb on - strand, within Psest_2042 at 2163.034 kb on + strand, within Psest_2042 at 2163.035 kb on - strand, within Psest_2042 at 2163.035 kb on - strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.430 kb on + strand, within Psest_2042 at 2163.431 kb on - strand, within Psest_2042 at 2163.431 kb on - strand, within Psest_2042 at 2163.431 kb on - strand, within Psest_2042 at 2163.431 kb on - strand, within Psest_2042 at 2163.431 kb on - strand, within Psest_2042 at 2163.556 kb on + strand, within Psest_2042 at 2163.556 kb on + strand, within Psest_2042 at 2163.556 kb on + strand, within Psest_2042 at 2163.556 kb on + strand, within Psest_2042 at 2163.556 kb on + strand, within Psest_2042 at 2163.556 kb on + strand, within Psest_2042 at 2163.557 kb on - strand, within Psest_2042 at 2163.557 kb on - strand, within Psest_2042 at 2163.557 kb on - strand, within Psest_2042 at 2163.682 kb on + strand at 2163.683 kb on - strand at 2163.683 kb on - strand at 2163.683 kb on - strand at 2163.683 kb on - strand at 2163.683 kb on - strand at 2163.829 kb on + strand at 2163.958 kb on + strand, within Psest_2043 at 2163.958 kb on + strand, within Psest_2043 at 2163.959 kb on - strand, within Psest_2043 at 2163.959 kb on - strand, within Psest_2043 at 2164.045 kb on + strand, within Psest_2043 at 2164.045 kb on + strand, within Psest_2043 at 2164.045 kb on + strand, within Psest_2043 at 2164.045 kb on + strand, within Psest_2043 at 2164.046 kb on - strand, within Psest_2043 at 2164.046 kb on - strand, within Psest_2043 at 2164.072 kb on + strand, within Psest_2043 at 2164.072 kb on + strand, within Psest_2043 at 2164.073 kb on - strand, within Psest_2043 at 2164.073 kb on - strand, within Psest_2043 at 2164.150 kb on + strand, within Psest_2043 at 2164.151 kb on - strand, within Psest_2043 at 2164.189 kb on + strand, within Psest_2043 at 2164.189 kb on + strand, within Psest_2043 at 2164.189 kb on + strand, within Psest_2043 at 2164.189 kb on + strand, within Psest_2043 at 2164.190 kb on - strand, within Psest_2043 at 2164.190 kb on - strand, within Psest_2043 at 2164.190 kb on - strand, within Psest_2043 at 2164.190 kb on - strand, within Psest_2043 at 2164.440 kb on + strand, within Psest_2044 at 2164.641 kb on + strand, within Psest_2044 at 2164.719 kb on + strand, within Psest_2044 at 2164.728 kb on + strand, within Psest_2044 at 2164.729 kb on - strand, within Psest_2044
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; dichromate stress sample1 remove 2,161,812 - Psest_2040 0.85 +0.5 2,161,896 - -0.6 2,161,896 - -0.6 2,161,927 + +0.4 2,161,927 + -1.7 2,161,928 - +1.0 2,162,055 + Psest_2041 0.15 -0.1 2,162,056 - Psest_2041 0.15 -0.8 2,162,326 + Psest_2041 0.46 -0.6 2,162,327 - Psest_2041 0.46 -2.6 2,162,330 - Psest_2041 0.47 +1.0 2,162,330 - Psest_2041 0.47 +0.1 2,162,330 - Psest_2041 0.47 +0.9 2,162,330 - Psest_2041 0.47 +0.5 2,162,330 - Psest_2041 0.47 +2.6 2,162,406 + Psest_2041 0.55 -0.0 2,162,610 + Psest_2041 0.79 -0.3 2,162,611 - Psest_2041 0.79 +0.9 2,162,611 - Psest_2041 0.79 -2.3 2,162,637 - Psest_2041 0.82 +1.2 2,162,637 - Psest_2041 0.82 +1.5 2,162,977 + Psest_2042 0.19 -0.0 2,163,002 + Psest_2042 0.22 +1.5 2,163,003 - Psest_2042 0.22 +0.1 2,163,003 - Psest_2042 0.22 +1.5 2,163,003 - Psest_2042 0.22 +0.9 2,163,034 + Psest_2042 0.25 +1.5 2,163,035 - Psest_2042 0.25 -2.1 2,163,035 - Psest_2042 0.25 -0.1 2,163,430 + Psest_2042 0.66 +1.2 2,163,430 + Psest_2042 0.66 +1.0 2,163,430 + Psest_2042 0.66 -0.2 2,163,430 + Psest_2042 0.66 +0.5 2,163,430 + Psest_2042 0.66 +0.5 2,163,430 + Psest_2042 0.66 -0.1 2,163,430 + Psest_2042 0.66 -1.3 2,163,430 + Psest_2042 0.66 +0.2 2,163,430 + Psest_2042 0.66 -0.7 2,163,431 - Psest_2042 0.66 +1.4 2,163,431 - Psest_2042 0.66 -0.1 2,163,431 - Psest_2042 0.66 +0.5 2,163,431 - Psest_2042 0.66 +2.0 2,163,431 - Psest_2042 0.66 +0.8 2,163,556 + Psest_2042 0.79 -0.2 2,163,556 + Psest_2042 0.79 -0.6 2,163,556 + Psest_2042 0.79 +1.1 2,163,556 + Psest_2042 0.79 +0.3 2,163,556 + Psest_2042 0.79 +0.1 2,163,556 + Psest_2042 0.79 +0.4 2,163,557 - Psest_2042 0.79 +0.2 2,163,557 - Psest_2042 0.79 +0.9 2,163,557 - Psest_2042 0.79 +1.4 2,163,682 + +0.5 2,163,683 - +0.2 2,163,683 - +0.2 2,163,683 - -0.9 2,163,683 - +1.3 2,163,683 - +0.4 2,163,829 + -0.9 2,163,958 + Psest_2043 0.36 -1.5 2,163,958 + Psest_2043 0.36 -1.3 2,163,959 - Psest_2043 0.36 -3.1 2,163,959 - Psest_2043 0.36 +1.1 2,164,045 + Psest_2043 0.53 -0.6 2,164,045 + Psest_2043 0.53 +0.1 2,164,045 + Psest_2043 0.53 +0.4 2,164,045 + Psest_2043 0.53 -1.5 2,164,046 - Psest_2043 0.53 +0.2 2,164,046 - Psest_2043 0.53 -0.7 2,164,072 + Psest_2043 0.59 +0.0 2,164,072 + Psest_2043 0.59 +0.3 2,164,073 - Psest_2043 0.59 +0.0 2,164,073 - Psest_2043 0.59 +0.8 2,164,150 + Psest_2043 0.74 +0.9 2,164,151 - Psest_2043 0.74 -0.4 2,164,189 + Psest_2043 0.82 -0.6 2,164,189 + Psest_2043 0.82 +2.0 2,164,189 + Psest_2043 0.82 -0.9 2,164,189 + Psest_2043 0.82 -0.5 2,164,190 - Psest_2043 0.82 +0.8 2,164,190 - Psest_2043 0.82 +0.5 2,164,190 - Psest_2043 0.82 +0.2 2,164,190 - Psest_2043 0.82 +1.5 2,164,440 + Psest_2044 0.14 -0.5 2,164,641 + Psest_2044 0.31 +0.8 2,164,719 + Psest_2044 0.37 +0.3 2,164,728 + Psest_2044 0.38 +0.7 2,164,729 - Psest_2044 0.38 +0.2
Or see this region's nucleotide sequence