Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1008

Experiment: Lactate-nitrate; anaerobic; cadmium stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1007 and Psest_1008 are separated by 41 nucleotidesPsest_1008 and Psest_1009 are separated by 74 nucleotidesPsest_1009 and Psest_1010 are separated by 82 nucleotides Psest_1007: Psest_1007 - Predicted permeases, at 1,092,114 to 1,093,013 _1007 Psest_1008: Psest_1008 - hypothetical protein, at 1,093,055 to 1,093,216 _1008 Psest_1009: Psest_1009 - hypothetical protein, at 1,093,291 to 1,094,049 _1009 Psest_1010: Psest_1010 - Predicted integral membrane protein, at 1,094,132 to 1,095,075 _1010 Position (kb) 1093 1094Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1092.166 kb on - strandat 1092.316 kb on - strand, within Psest_1007at 1092.316 kb on - strand, within Psest_1007at 1092.316 kb on - strand, within Psest_1007at 1092.416 kb on + strand, within Psest_1007at 1092.416 kb on + strand, within Psest_1007at 1092.416 kb on + strand, within Psest_1007at 1092.474 kb on + strand, within Psest_1007at 1092.474 kb on + strand, within Psest_1007at 1092.474 kb on + strand, within Psest_1007at 1092.474 kb on + strand, within Psest_1007at 1092.474 kb on + strand, within Psest_1007at 1092.475 kb on - strand, within Psest_1007at 1092.531 kb on + strand, within Psest_1007at 1092.531 kb on + strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.532 kb on - strand, within Psest_1007at 1092.559 kb on + strand, within Psest_1007at 1092.559 kb on + strand, within Psest_1007at 1092.559 kb on + strand, within Psest_1007at 1092.560 kb on - strand, within Psest_1007at 1092.560 kb on - strand, within Psest_1007at 1093.023 kb on - strandat 1093.023 kb on - strandat 1093.023 kb on - strandat 1093.198 kb on - strand, within Psest_1008at 1094.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cadmium stress sample3
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1,092,166 - -1.0
1,092,316 - Psest_1007 0.22 +0.9
1,092,316 - Psest_1007 0.22 +1.5
1,092,316 - Psest_1007 0.22 +1.9
1,092,416 + Psest_1007 0.34 -0.2
1,092,416 + Psest_1007 0.34 +0.5
1,092,416 + Psest_1007 0.34 -0.8
1,092,474 + Psest_1007 0.40 -0.0
1,092,474 + Psest_1007 0.40 +1.5
1,092,474 + Psest_1007 0.40 -2.5
1,092,474 + Psest_1007 0.40 +1.2
1,092,474 + Psest_1007 0.40 +0.0
1,092,475 - Psest_1007 0.40 +0.5
1,092,531 + Psest_1007 0.46 -2.5
1,092,531 + Psest_1007 0.46 +0.2
1,092,532 - Psest_1007 0.46 +0.9
1,092,532 - Psest_1007 0.46 +0.4
1,092,532 - Psest_1007 0.46 +0.1
1,092,532 - Psest_1007 0.46 -1.1
1,092,532 - Psest_1007 0.46 -1.0
1,092,532 - Psest_1007 0.46 +2.9
1,092,532 - Psest_1007 0.46 -1.3
1,092,532 - Psest_1007 0.46 +0.5
1,092,559 + Psest_1007 0.49 -0.7
1,092,559 + Psest_1007 0.49 -2.0
1,092,559 + Psest_1007 0.49 -1.0
1,092,560 - Psest_1007 0.50 +0.1
1,092,560 - Psest_1007 0.50 -0.1
1,093,023 - -0.8
1,093,023 - -1.6
1,093,023 - +0.1
1,093,198 - Psest_1008 0.88 +2.6
1,094,126 - -0.0

Or see this region's nucleotide sequence