Experiment: Lactate-nitrate; anaerobic; cadmium stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0627 and Psest_0628 are separated by 73 nucleotides Psest_0628 and Psest_0629 are separated by 212 nucleotides
Psest_0627: Psest_0627 - Superfamily I DNA and RNA helicases, at 678,172 to 679,356
_0627
Psest_0628: Psest_0628 - hypothetical protein, at 679,430 to 679,708
_0628
Psest_0629: Psest_0629 - ATP-dependent helicase HrpB, at 679,921 to 682,446
_0629
Position (kb) 679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 678.435 kb on + strand, within Psest_0627 at 678.465 kb on - strand, within Psest_0627 at 678.475 kb on - strand, within Psest_0627 at 678.481 kb on + strand, within Psest_0627 at 678.482 kb on - strand, within Psest_0627 at 678.482 kb on - strand, within Psest_0627 at 678.482 kb on - strand, within Psest_0627 at 678.485 kb on - strand, within Psest_0627 at 678.485 kb on - strand, within Psest_0627 at 678.485 kb on - strand, within Psest_0627 at 678.485 kb on - strand, within Psest_0627 at 678.539 kb on - strand, within Psest_0627 at 678.646 kb on + strand, within Psest_0627 at 678.658 kb on + strand, within Psest_0627 at 678.658 kb on + strand, within Psest_0627 at 678.659 kb on - strand, within Psest_0627 at 678.659 kb on - strand, within Psest_0627 at 678.694 kb on + strand, within Psest_0627 at 678.769 kb on + strand, within Psest_0627 at 678.769 kb on + strand, within Psest_0627 at 678.769 kb on + strand, within Psest_0627 at 678.770 kb on - strand, within Psest_0627 at 678.770 kb on - strand, within Psest_0627 at 678.770 kb on - strand, within Psest_0627 at 678.770 kb on - strand, within Psest_0627 at 678.824 kb on - strand, within Psest_0627 at 678.881 kb on + strand, within Psest_0627 at 678.881 kb on + strand, within Psest_0627 at 678.881 kb on + strand, within Psest_0627 at 678.881 kb on + strand, within Psest_0627 at 678.882 kb on - strand, within Psest_0627 at 678.882 kb on - strand, within Psest_0627 at 678.882 kb on - strand, within Psest_0627 at 678.968 kb on + strand, within Psest_0627 at 678.993 kb on - strand, within Psest_0627 at 678.993 kb on - strand, within Psest_0627 at 679.018 kb on + strand, within Psest_0627 at 679.018 kb on + strand, within Psest_0627 at 679.044 kb on - strand, within Psest_0627 at 679.044 kb on - strand, within Psest_0627 at 679.044 kb on - strand, within Psest_0627 at 679.076 kb on - strand, within Psest_0627 at 679.076 kb on - strand, within Psest_0627 at 679.092 kb on + strand, within Psest_0627 at 679.092 kb on + strand, within Psest_0627 at 679.093 kb on - strand, within Psest_0627 at 679.093 kb on - strand, within Psest_0627 at 679.093 kb on - strand, within Psest_0627 at 679.093 kb on - strand, within Psest_0627 at 679.093 kb on - strand, within Psest_0627 at 679.100 kb on - strand, within Psest_0627 at 679.101 kb on + strand, within Psest_0627 at 679.101 kb on + strand, within Psest_0627 at 679.102 kb on - strand, within Psest_0627 at 679.102 kb on - strand, within Psest_0627 at 679.102 kb on - strand, within Psest_0627 at 679.102 kb on - strand, within Psest_0627 at 679.102 kb on - strand, within Psest_0627 at 679.102 kb on - strand, within Psest_0627 at 679.125 kb on - strand, within Psest_0627 at 679.158 kb on + strand, within Psest_0627 at 679.159 kb on - strand, within Psest_0627 at 679.159 kb on - strand, within Psest_0627 at 679.206 kb on + strand, within Psest_0627 at 679.207 kb on - strand, within Psest_0627 at 679.232 kb on + strand, within Psest_0627 at 679.232 kb on + strand, within Psest_0627 at 679.232 kb on + strand, within Psest_0627 at 679.232 kb on + strand, within Psest_0627 at 679.232 kb on + strand, within Psest_0627 at 679.232 kb on + strand, within Psest_0627 at 679.233 kb on - strand, within Psest_0627 at 679.233 kb on - strand, within Psest_0627 at 679.233 kb on - strand, within Psest_0627 at 679.233 kb on - strand, within Psest_0627 at 679.233 kb on - strand, within Psest_0627 at 679.233 kb on - strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.234 kb on + strand, within Psest_0627 at 679.235 kb on - strand, within Psest_0627 at 679.235 kb on - strand, within Psest_0627 at 679.235 kb on - strand, within Psest_0627 at 679.235 kb on - strand, within Psest_0627 at 679.235 kb on - strand, within Psest_0627 at 679.235 kb on - strand, within Psest_0627 at 679.258 kb on + strand at 679.284 kb on + strand at 679.285 kb on - strand at 679.313 kb on + strand at 679.426 kb on + strand at 679.426 kb on + strand at 679.427 kb on - strand at 679.427 kb on - strand at 679.427 kb on - strand at 679.427 kb on - strand at 679.427 kb on - strand at 679.427 kb on - strand at 679.427 kb on - strand at 679.456 kb on + strand at 679.482 kb on + strand, within Psest_0628 at 679.483 kb on - strand, within Psest_0628 at 679.483 kb on - strand, within Psest_0628 at 679.483 kb on - strand, within Psest_0628 at 679.483 kb on - strand, within Psest_0628 at 679.522 kb on - strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.537 kb on + strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.538 kb on - strand, within Psest_0628 at 679.542 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.644 kb on + strand, within Psest_0628 at 679.645 kb on - strand, within Psest_0628 at 679.645 kb on - strand, within Psest_0628 at 679.671 kb on + strand, within Psest_0628 at 679.671 kb on + strand, within Psest_0628 at 679.672 kb on - strand, within Psest_0628 at 679.798 kb on + strand at 679.798 kb on + strand at 679.799 kb on - strand at 679.861 kb on - strand at 679.888 kb on + strand at 679.888 kb on + strand at 679.888 kb on + strand at 679.889 kb on - strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.892 kb on + strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.894 kb on + strand at 679.894 kb on + strand at 679.894 kb on + strand at 679.894 kb on + strand at 679.894 kb on + strand at 679.894 kb on + strand at 679.894 kb on + strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.895 kb on - strand at 679.910 kb on + strand at 679.910 kb on + strand at 679.911 kb on - strand at 679.958 kb on + strand at 679.959 kb on - strand at 679.981 kb on - strand at 679.981 kb on - strand at 679.981 kb on - strand at 679.981 kb on - strand at 679.991 kb on + strand at 679.991 kb on + strand at 679.992 kb on - strand at 679.992 kb on - strand at 680.073 kb on + strand at 680.073 kb on + strand at 680.074 kb on - strand at 680.074 kb on - strand at 680.099 kb on + strand at 680.100 kb on - strand at 680.187 kb on + strand, within Psest_0629 at 680.188 kb on - strand, within Psest_0629 at 680.216 kb on + strand, within Psest_0629 at 680.216 kb on + strand, within Psest_0629 at 680.216 kb on + strand, within Psest_0629 at 680.236 kb on - strand, within Psest_0629 at 680.236 kb on - strand, within Psest_0629 at 680.264 kb on + strand, within Psest_0629 at 680.264 kb on + strand, within Psest_0629 at 680.265 kb on - strand, within Psest_0629 at 680.265 kb on - strand, within Psest_0629 at 680.265 kb on - strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.285 kb on + strand, within Psest_0629 at 680.286 kb on - strand, within Psest_0629 at 680.286 kb on - strand, within Psest_0629 at 680.286 kb on - strand, within Psest_0629 at 680.286 kb on - strand, within Psest_0629 at 680.296 kb on + strand, within Psest_0629 at 680.296 kb on + strand, within Psest_0629 at 680.296 kb on + strand, within Psest_0629 at 680.296 kb on + strand, within Psest_0629 at 680.296 kb on + strand, within Psest_0629 at 680.297 kb on - strand, within Psest_0629 at 680.307 kb on + strand, within Psest_0629 at 680.307 kb on + strand, within Psest_0629 at 680.450 kb on + strand, within Psest_0629 at 680.470 kb on + strand, within Psest_0629 at 680.471 kb on - strand, within Psest_0629
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cadmium stress sample3 remove 678,435 + Psest_0627 0.22 +0.6 678,465 - Psest_0627 0.25 -1.1 678,475 - Psest_0627 0.26 +0.5 678,481 + Psest_0627 0.26 +2.0 678,482 - Psest_0627 0.26 -0.7 678,482 - Psest_0627 0.26 +0.1 678,482 - Psest_0627 0.26 +0.3 678,485 - Psest_0627 0.26 -0.1 678,485 - Psest_0627 0.26 -1.9 678,485 - Psest_0627 0.26 -0.0 678,485 - Psest_0627 0.26 -2.9 678,539 - Psest_0627 0.31 -0.1 678,646 + Psest_0627 0.40 -1.5 678,658 + Psest_0627 0.41 +0.1 678,658 + Psest_0627 0.41 -0.2 678,659 - Psest_0627 0.41 -1.6 678,659 - Psest_0627 0.41 -1.3 678,694 + Psest_0627 0.44 -0.1 678,769 + Psest_0627 0.50 +0.3 678,769 + Psest_0627 0.50 -0.6 678,769 + Psest_0627 0.50 +0.7 678,770 - Psest_0627 0.50 +1.6 678,770 - Psest_0627 0.50 -0.5 678,770 - Psest_0627 0.50 -1.5 678,770 - Psest_0627 0.50 -0.5 678,824 - Psest_0627 0.55 +0.4 678,881 + Psest_0627 0.60 +0.5 678,881 + Psest_0627 0.60 -1.1 678,881 + Psest_0627 0.60 +0.6 678,881 + Psest_0627 0.60 -0.5 678,882 - Psest_0627 0.60 -1.1 678,882 - Psest_0627 0.60 +0.3 678,882 - Psest_0627 0.60 -0.9 678,968 + Psest_0627 0.67 +0.1 678,993 - Psest_0627 0.69 +1.1 678,993 - Psest_0627 0.69 +0.3 679,018 + Psest_0627 0.71 -0.6 679,018 + Psest_0627 0.71 -0.8 679,044 - Psest_0627 0.74 -0.7 679,044 - Psest_0627 0.74 -0.1 679,044 - Psest_0627 0.74 +0.7 679,076 - Psest_0627 0.76 -1.1 679,076 - Psest_0627 0.76 +0.3 679,092 + Psest_0627 0.78 -0.5 679,092 + Psest_0627 0.78 +0.5 679,093 - Psest_0627 0.78 +0.8 679,093 - Psest_0627 0.78 +1.3 679,093 - Psest_0627 0.78 +0.1 679,093 - Psest_0627 0.78 -0.6 679,093 - Psest_0627 0.78 -0.3 679,100 - Psest_0627 0.78 -0.2 679,101 + Psest_0627 0.78 -0.9 679,101 + Psest_0627 0.78 -0.6 679,102 - Psest_0627 0.78 +0.5 679,102 - Psest_0627 0.78 -0.8 679,102 - Psest_0627 0.78 -1.0 679,102 - Psest_0627 0.78 -1.1 679,102 - Psest_0627 0.78 -1.5 679,102 - Psest_0627 0.78 +0.5 679,125 - Psest_0627 0.80 +0.2 679,158 + Psest_0627 0.83 -0.8 679,159 - Psest_0627 0.83 -0.6 679,159 - Psest_0627 0.83 +0.9 679,206 + Psest_0627 0.87 -0.6 679,207 - Psest_0627 0.87 -2.3 679,232 + Psest_0627 0.89 -2.0 679,232 + Psest_0627 0.89 -2.5 679,232 + Psest_0627 0.89 -0.5 679,232 + Psest_0627 0.89 -2.1 679,232 + Psest_0627 0.89 +0.3 679,232 + Psest_0627 0.89 -0.8 679,233 - Psest_0627 0.90 -0.4 679,233 - Psest_0627 0.90 -2.2 679,233 - Psest_0627 0.90 -0.5 679,233 - Psest_0627 0.90 -2.9 679,233 - Psest_0627 0.90 -0.1 679,233 - Psest_0627 0.90 +0.8 679,234 + Psest_0627 0.90 -1.4 679,234 + Psest_0627 0.90 +0.2 679,234 + Psest_0627 0.90 -0.0 679,234 + Psest_0627 0.90 -0.6 679,234 + Psest_0627 0.90 +0.2 679,234 + Psest_0627 0.90 -0.3 679,234 + Psest_0627 0.90 -0.2 679,234 + Psest_0627 0.90 +1.1 679,234 + Psest_0627 0.90 -2.1 679,234 + Psest_0627 0.90 +0.1 679,235 - Psest_0627 0.90 +0.2 679,235 - Psest_0627 0.90 -1.5 679,235 - Psest_0627 0.90 +0.6 679,235 - Psest_0627 0.90 -1.3 679,235 - Psest_0627 0.90 +2.8 679,235 - Psest_0627 0.90 -2.3 679,258 + -0.4 679,284 + -0.1 679,285 - -0.5 679,313 + -1.5 679,426 + -1.6 679,426 + -0.6 679,427 - +0.4 679,427 - +0.5 679,427 - +0.5 679,427 - -2.2 679,427 - -0.8 679,427 - -0.1 679,427 - -0.7 679,456 + -0.8 679,482 + Psest_0628 0.19 +1.7 679,483 - Psest_0628 0.19 -1.4 679,483 - Psest_0628 0.19 -1.1 679,483 - Psest_0628 0.19 -0.6 679,483 - Psest_0628 0.19 +0.2 679,522 - Psest_0628 0.33 -2.4 679,537 + Psest_0628 0.38 +0.0 679,537 + Psest_0628 0.38 +0.9 679,537 + Psest_0628 0.38 +0.2 679,537 + Psest_0628 0.38 +0.3 679,537 + Psest_0628 0.38 +3.1 679,537 + Psest_0628 0.38 -2.5 679,537 + Psest_0628 0.38 +0.1 679,538 - Psest_0628 0.39 -0.5 679,538 - Psest_0628 0.39 +0.1 679,538 - Psest_0628 0.39 -1.6 679,538 - Psest_0628 0.39 +0.8 679,538 - Psest_0628 0.39 -0.2 679,538 - Psest_0628 0.39 -0.5 679,538 - Psest_0628 0.39 +0.3 679,542 + Psest_0628 0.40 +0.0 679,644 + Psest_0628 0.77 -0.4 679,644 + Psest_0628 0.77 +0.3 679,644 + Psest_0628 0.77 -0.9 679,644 + Psest_0628 0.77 +0.7 679,644 + Psest_0628 0.77 +0.3 679,644 + Psest_0628 0.77 -1.8 679,644 + Psest_0628 0.77 -0.8 679,645 - Psest_0628 0.77 -1.1 679,645 - Psest_0628 0.77 +0.6 679,671 + Psest_0628 0.86 +0.5 679,671 + Psest_0628 0.86 -2.6 679,672 - Psest_0628 0.87 -0.8 679,798 + +0.8 679,798 + +1.2 679,799 - -0.9 679,861 - +1.1 679,888 + +0.5 679,888 + -0.1 679,888 + -0.8 679,889 - -1.0 679,892 + -0.2 679,892 + -0.0 679,892 + -0.6 679,892 + -0.2 679,892 + +0.6 679,892 + -0.0 679,892 + +0.4 679,892 + -1.4 679,892 + -0.3 679,892 + -1.4 679,892 + -0.9 679,892 + +0.3 679,893 - -0.2 679,893 - +0.8 679,893 - +1.5 679,893 - -0.5 679,893 - -1.3 679,893 - -0.6 679,893 - -1.3 679,893 - -1.0 679,893 - +0.2 679,893 - -0.9 679,893 - -0.5 679,893 - -0.2 679,893 - +0.0 679,893 - -0.3 679,893 - +0.2 679,894 + -0.5 679,894 + +0.4 679,894 + +0.7 679,894 + -0.7 679,894 + +0.5 679,894 + +0.0 679,894 + -1.2 679,895 - +0.3 679,895 - -0.5 679,895 - +0.2 679,895 - +0.2 679,895 - -0.1 679,895 - +0.5 679,895 - +1.0 679,895 - -0.4 679,910 + -0.8 679,910 + -0.3 679,911 - -1.1 679,958 + +0.0 679,959 - -0.5 679,981 - +1.0 679,981 - -0.0 679,981 - -0.7 679,981 - -0.3 679,991 + +0.8 679,991 + -0.3 679,992 - +2.2 679,992 - +1.3 680,073 + +0.0 680,073 + +0.7 680,074 - +0.2 680,074 - -0.2 680,099 + +0.5 680,100 - -1.8 680,187 + Psest_0629 0.11 -2.3 680,188 - Psest_0629 0.11 +2.0 680,216 + Psest_0629 0.12 -1.1 680,216 + Psest_0629 0.12 -0.1 680,216 + Psest_0629 0.12 -0.3 680,236 - Psest_0629 0.12 +2.2 680,236 - Psest_0629 0.12 +0.0 680,264 + Psest_0629 0.14 +0.7 680,264 + Psest_0629 0.14 -0.6 680,265 - Psest_0629 0.14 +0.5 680,265 - Psest_0629 0.14 +0.5 680,265 - Psest_0629 0.14 -1.5 680,285 + Psest_0629 0.14 -1.7 680,285 + Psest_0629 0.14 -0.7 680,285 + Psest_0629 0.14 -0.5 680,285 + Psest_0629 0.14 +0.1 680,285 + Psest_0629 0.14 +2.8 680,285 + Psest_0629 0.14 -1.4 680,285 + Psest_0629 0.14 +1.0 680,285 + Psest_0629 0.14 -1.8 680,285 + Psest_0629 0.14 -0.1 680,286 - Psest_0629 0.14 -3.2 680,286 - Psest_0629 0.14 +0.8 680,286 - Psest_0629 0.14 -0.6 680,286 - Psest_0629 0.14 +0.5 680,296 + Psest_0629 0.15 -0.4 680,296 + Psest_0629 0.15 +3.3 680,296 + Psest_0629 0.15 -0.9 680,296 + Psest_0629 0.15 +0.4 680,296 + Psest_0629 0.15 +0.8 680,297 - Psest_0629 0.15 -2.8 680,307 + Psest_0629 0.15 +1.3 680,307 + Psest_0629 0.15 -1.3 680,450 + Psest_0629 0.21 +1.9 680,470 + Psest_0629 0.22 +0.3 680,471 - Psest_0629 0.22 -1.0
Or see this region's nucleotide sequence