Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0545

Experiment: Lactate-nitrate; anaerobic; cadmium stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0542 and Psest_0543 are separated by 80 nucleotidesPsest_0543 and Psest_0544 are separated by 15 nucleotidesPsest_0544 and Psest_0545 are separated by 76 nucleotidesPsest_0545 and Psest_0546 overlap by 4 nucleotidesPsest_0546 and Psest_0547 overlap by 4 nucleotides Psest_0542: Psest_0542 - AMP nucleosidase, at 597,893 to 599,368 _0542 Psest_0543: Psest_0543 - Protein of unknown function (DUF2789)., at 599,449 to 599,691 _0543 Psest_0544: Psest_0544 - Hydrogenase/urease accessory protein, at 599,707 to 600,279 _0544 Psest_0545: Psest_0545 - urease accessory protein UreG, at 600,356 to 600,970 _0545 Psest_0546: Psest_0546 - hypothetical protein, at 600,967 to 601,632 _0546 Psest_0547: Psest_0547 - Urease accessory protein UreF, at 601,629 to 602,321 _0547 Position (kb) 600 601Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 599.408 kb on + strandat 599.409 kb on - strandat 599.415 kb on - strandat 599.415 kb on - strandat 599.415 kb on - strandat 599.415 kb on - strandat 599.475 kb on + strand, within Psest_0543at 599.563 kb on + strand, within Psest_0543at 600.124 kb on + strand, within Psest_0544at 600.125 kb on - strand, within Psest_0544at 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.873 kb on + strand, within Psest_0545at 601.060 kb on - strand, within Psest_0546at 601.080 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.169 kb on - strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.362 kb on + strand, within Psest_0546at 601.429 kb on + strand, within Psest_0546at 601.595 kb on - strandat 601.637 kb on + strandat 601.637 kb on + strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.651 kb on + strandat 601.651 kb on + strandat 601.652 kb on - strandat 601.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cadmium stress sample2
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599,408 + +0.8
599,409 - +0.3
599,415 - +1.6
599,415 - -0.4
599,415 - -1.0
599,415 - -0.5
599,475 + Psest_0543 0.11 -0.2
599,563 + Psest_0543 0.47 +0.3
600,124 + Psest_0544 0.73 -1.6
600,125 - Psest_0544 0.73 +1.3
600,271 + -0.0
600,271 + +1.4
600,271 + +0.6
600,271 + +2.0
600,606 + Psest_0545 0.41 +0.0
600,606 + Psest_0545 0.41 -0.1
600,606 + Psest_0545 0.41 +0.4
600,606 + Psest_0545 0.41 +0.6
600,606 + Psest_0545 0.41 +4.1
600,606 + Psest_0545 0.41 +0.6
600,606 + Psest_0545 0.41 +0.6
600,606 + Psest_0545 0.41 -0.1
600,606 + Psest_0545 0.41 +1.8
600,606 + Psest_0545 0.41 -0.4
600,606 + Psest_0545 0.41 -0.1
600,606 + Psest_0545 0.41 +2.8
600,606 + Psest_0545 0.41 +1.8
600,607 - Psest_0545 0.41 +2.5
600,607 - Psest_0545 0.41 +0.7
600,607 - Psest_0545 0.41 +1.1
600,607 - Psest_0545 0.41 +1.2
600,607 - Psest_0545 0.41 +0.2
600,607 - Psest_0545 0.41 -4.4
600,843 + Psest_0545 0.79 +0.9
600,843 + Psest_0545 0.79 -0.4
600,843 + Psest_0545 0.79 +0.8
600,843 + Psest_0545 0.79 +0.6
600,843 + Psest_0545 0.79 +1.2
600,843 + Psest_0545 0.79 +0.4
600,843 + Psest_0545 0.79 +0.3
600,843 + Psest_0545 0.79 +1.3
600,843 + Psest_0545 0.79 +0.6
600,843 + Psest_0545 0.79 -0.5
600,843 + Psest_0545 0.79 -0.3
600,844 - Psest_0545 0.79 -0.5
600,844 - Psest_0545 0.79 +0.1
600,844 - Psest_0545 0.79 +0.2
600,844 - Psest_0545 0.79 +0.9
600,844 - Psest_0545 0.79 -0.7
600,844 - Psest_0545 0.79 +0.3
600,844 - Psest_0545 0.79 +0.4
600,844 - Psest_0545 0.79 +0.8
600,844 - Psest_0545 0.79 +0.2
600,873 + Psest_0545 0.84 +2.6
601,060 - Psest_0546 0.14 +0.2
601,080 + Psest_0546 0.17 +2.0
601,099 + Psest_0546 0.20 -0.1
601,099 + Psest_0546 0.20 -0.4
601,168 + Psest_0546 0.30 +0.5
601,168 + Psest_0546 0.30 -0.2
601,168 + Psest_0546 0.30 +0.2
601,168 + Psest_0546 0.30 +1.7
601,168 + Psest_0546 0.30 +0.5
601,169 - Psest_0546 0.30 +0.9
601,317 + Psest_0546 0.53 +1.5
601,317 + Psest_0546 0.53 +0.4
601,317 + Psest_0546 0.53 -0.8
601,317 + Psest_0546 0.53 +0.4
601,317 + Psest_0546 0.53 -0.7
601,362 + Psest_0546 0.59 -0.6
601,429 + Psest_0546 0.69 +0.3
601,595 - -0.6
601,637 + -0.6
601,637 + +0.0
601,638 - -0.2
601,638 - +1.4
601,638 - +3.2
601,638 - -1.5
601,638 - -1.6
601,638 - +2.5
601,651 + -0.0
601,651 + +1.0
601,652 - +0.3
601,652 - +0.8

Or see this region's nucleotide sequence