Experiment: Lactate-nitrate; anaerobic; cadmium stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3282 and Psest_3283 are separated by 69 nucleotides Psest_3283 and Psest_3284 are separated by 33 nucleotides Psest_3284 and Psest_3285 overlap by 4 nucleotides Psest_3285 and Psest_3286 are separated by 142 nucleotides
Psest_3282: Psest_3282 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 3,448,963 to 3,450,000
_3282
Psest_3283: Psest_3283 - Predicted membrane protein, at 3,450,070 to 3,450,747
_3283
Psest_3284: Psest_3284 - Uncharacterized protein conserved in bacteria, at 3,450,781 to 3,450,975
_3284
Psest_3285: Psest_3285 - dephospho-CoA kinase, at 3,450,972 to 3,451,580
_3285
Psest_3286: Psest_3286 - Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, at 3,451,723 to 3,452,592
_3286
Position (kb)
3450
3451 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3449.094 kb on - strand, within Psest_3282 at 3449.094 kb on - strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.106 kb on + strand, within Psest_3282 at 3449.107 kb on - strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.147 kb on - strand, within Psest_3282 at 3449.147 kb on - strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.166 kb on + strand, within Psest_3282 at 3449.167 kb on - strand, within Psest_3282 at 3449.167 kb on - strand, within Psest_3282 at 3449.167 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.245 kb on - strand, within Psest_3282 at 3449.245 kb on - strand, within Psest_3282 at 3449.245 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.292 kb on - strand, within Psest_3282 at 3449.292 kb on - strand, within Psest_3282 at 3449.292 kb on - strand, within Psest_3282 at 3449.347 kb on + strand, within Psest_3282 at 3449.348 kb on - strand, within Psest_3282 at 3449.464 kb on - strand, within Psest_3282 at 3449.464 kb on - strand, within Psest_3282 at 3449.524 kb on + strand, within Psest_3282 at 3449.524 kb on + strand, within Psest_3282 at 3449.524 kb on + strand, within Psest_3282 at 3449.525 kb on - strand, within Psest_3282 at 3449.525 kb on - strand, within Psest_3282 at 3449.525 kb on - strand, within Psest_3282 at 3449.535 kb on - strand, within Psest_3282 at 3449.591 kb on + strand, within Psest_3282 at 3449.591 kb on + strand, within Psest_3282 at 3449.592 kb on - strand, within Psest_3282 at 3449.592 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.752 kb on + strand, within Psest_3282 at 3449.755 kb on - strand, within Psest_3282 at 3449.789 kb on - strand, within Psest_3282 at 3449.789 kb on - strand, within Psest_3282 at 3449.791 kb on - strand, within Psest_3282 at 3449.791 kb on - strand, within Psest_3282 at 3449.791 kb on - strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.842 kb on + strand, within Psest_3282 at 3449.842 kb on + strand, within Psest_3282 at 3449.843 kb on - strand, within Psest_3282 at 3449.843 kb on - strand, within Psest_3282 at 3449.843 kb on - strand, within Psest_3282 at 3449.919 kb on + strand at 3449.919 kb on + strand at 3449.920 kb on - strand at 3449.930 kb on + strand at 3449.960 kb on + strand at 3449.960 kb on + strand at 3450.066 kb on - strand at 3450.110 kb on + strand at 3450.110 kb on + strand at 3450.125 kb on - strand at 3450.125 kb on - strand at 3450.125 kb on - strand at 3450.173 kb on + strand, within Psest_3283 at 3450.280 kb on - strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.282 kb on - strand, within Psest_3283 at 3450.282 kb on - strand, within Psest_3283 at 3450.282 kb on - strand, within Psest_3283 at 3450.297 kb on + strand, within Psest_3283 at 3450.297 kb on + strand, within Psest_3283 at 3450.298 kb on - strand, within Psest_3283 at 3450.298 kb on - strand, within Psest_3283 at 3450.298 kb on - strand, within Psest_3283 at 3450.396 kb on - strand, within Psest_3283 at 3450.479 kb on + strand, within Psest_3283 at 3450.479 kb on + strand, within Psest_3283 at 3450.480 kb on - strand, within Psest_3283 at 3450.491 kb on + strand, within Psest_3283 at 3450.491 kb on + strand, within Psest_3283 at 3450.492 kb on - strand, within Psest_3283 at 3450.558 kb on - strand, within Psest_3283 at 3450.563 kb on + strand, within Psest_3283 at 3450.564 kb on - strand, within Psest_3283 at 3450.614 kb on - strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.626 kb on + strand, within Psest_3283 at 3450.627 kb on - strand, within Psest_3283 at 3450.645 kb on + strand, within Psest_3283 at 3450.645 kb on + strand, within Psest_3283 at 3450.935 kb on - strand, within Psest_3284 at 3451.620 kb on + strand at 3451.620 kb on + strand at 3451.620 kb on + strand at 3451.621 kb on - strand at 3451.623 kb on + strand at 3451.624 kb on - strand at 3451.657 kb on + strand at 3451.665 kb on - strand at 3451.685 kb on + strand at 3451.686 kb on - strand at 3451.745 kb on + strand at 3451.745 kb on + strand at 3451.746 kb on - strand at 3451.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cadmium stress sample2 remove 3,449,094 - Psest_3282 0.13 -0.4 3,449,094 - Psest_3282 0.13 +0.2 3,449,102 + Psest_3282 0.13 -0.1 3,449,102 + Psest_3282 0.13 -1.0 3,449,102 + Psest_3282 0.13 +0.1 3,449,102 + Psest_3282 0.13 +0.5 3,449,103 - Psest_3282 0.13 -0.2 3,449,103 - Psest_3282 0.13 +1.1 3,449,103 - Psest_3282 0.13 +1.1 3,449,103 - Psest_3282 0.13 -0.7 3,449,103 - Psest_3282 0.13 -1.0 3,449,103 - Psest_3282 0.13 +0.5 3,449,103 - Psest_3282 0.13 -0.5 3,449,103 - Psest_3282 0.13 +0.6 3,449,103 - Psest_3282 0.13 -1.8 3,449,103 - Psest_3282 0.13 -2.0 3,449,103 - Psest_3282 0.13 -1.9 3,449,106 + Psest_3282 0.14 -0.5 3,449,107 - Psest_3282 0.14 +0.5 3,449,146 + Psest_3282 0.18 +0.1 3,449,146 + Psest_3282 0.18 +0.9 3,449,146 + Psest_3282 0.18 -1.4 3,449,146 + Psest_3282 0.18 +4.4 3,449,146 + Psest_3282 0.18 +0.5 3,449,147 - Psest_3282 0.18 -0.4 3,449,147 - Psest_3282 0.18 -1.6 3,449,164 + Psest_3282 0.19 +0.8 3,449,164 + Psest_3282 0.19 -2.0 3,449,164 + Psest_3282 0.19 +2.0 3,449,164 + Psest_3282 0.19 -2.6 3,449,164 + Psest_3282 0.19 -2.2 3,449,164 + Psest_3282 0.19 -2.4 3,449,165 - Psest_3282 0.19 +1.8 3,449,165 - Psest_3282 0.19 +0.5 3,449,165 - Psest_3282 0.19 -2.5 3,449,165 - Psest_3282 0.19 -0.7 3,449,165 - Psest_3282 0.19 -1.8 3,449,165 - Psest_3282 0.19 +0.6 3,449,165 - Psest_3282 0.19 +0.2 3,449,165 - Psest_3282 0.19 +0.9 3,449,165 - Psest_3282 0.19 -0.1 3,449,165 - Psest_3282 0.19 +0.8 3,449,165 - Psest_3282 0.19 -0.2 3,449,166 + Psest_3282 0.20 +2.5 3,449,167 - Psest_3282 0.20 +0.0 3,449,167 - Psest_3282 0.20 +1.1 3,449,167 - Psest_3282 0.20 +0.1 3,449,177 - Psest_3282 0.21 +0.3 3,449,177 - Psest_3282 0.21 -0.1 3,449,177 - Psest_3282 0.21 -0.5 3,449,177 - Psest_3282 0.21 -0.5 3,449,244 + Psest_3282 0.27 -0.1 3,449,244 + Psest_3282 0.27 +0.6 3,449,244 + Psest_3282 0.27 +0.8 3,449,244 + Psest_3282 0.27 -0.8 3,449,244 + Psest_3282 0.27 -0.4 3,449,245 - Psest_3282 0.27 -0.1 3,449,245 - Psest_3282 0.27 +0.4 3,449,245 - Psest_3282 0.27 -0.5 3,449,247 - Psest_3282 0.27 +0.1 3,449,247 - Psest_3282 0.27 +1.3 3,449,247 - Psest_3282 0.27 +0.2 3,449,247 - Psest_3282 0.27 +1.0 3,449,289 + Psest_3282 0.31 -1.1 3,449,289 + Psest_3282 0.31 -1.2 3,449,289 + Psest_3282 0.31 -1.0 3,449,289 + Psest_3282 0.31 +1.7 3,449,289 + Psest_3282 0.31 -3.2 3,449,289 + Psest_3282 0.31 -0.7 3,449,289 + Psest_3282 0.31 +0.2 3,449,289 + Psest_3282 0.31 -1.5 3,449,289 + Psest_3282 0.31 -0.5 3,449,289 + Psest_3282 0.31 +0.2 3,449,289 + Psest_3282 0.31 +0.5 3,449,290 - Psest_3282 0.32 +0.5 3,449,290 - Psest_3282 0.32 -0.2 3,449,290 - Psest_3282 0.32 +1.8 3,449,290 - Psest_3282 0.32 -0.2 3,449,290 - Psest_3282 0.32 +0.5 3,449,290 - Psest_3282 0.32 +0.9 3,449,290 - Psest_3282 0.32 -0.9 3,449,290 - Psest_3282 0.32 +0.6 3,449,290 - Psest_3282 0.32 +1.4 3,449,291 + Psest_3282 0.32 +0.0 3,449,291 + Psest_3282 0.32 -1.3 3,449,291 + Psest_3282 0.32 -1.7 3,449,291 + Psest_3282 0.32 -0.5 3,449,291 + Psest_3282 0.32 -1.4 3,449,291 + Psest_3282 0.32 -1.5 3,449,291 + Psest_3282 0.32 +1.6 3,449,291 + Psest_3282 0.32 -0.5 3,449,291 + Psest_3282 0.32 +1.3 3,449,291 + Psest_3282 0.32 -0.4 3,449,291 + Psest_3282 0.32 -0.8 3,449,291 + Psest_3282 0.32 -1.4 3,449,291 + Psest_3282 0.32 -0.9 3,449,291 + Psest_3282 0.32 -0.8 3,449,292 - Psest_3282 0.32 +2.1 3,449,292 - Psest_3282 0.32 +0.2 3,449,292 - Psest_3282 0.32 -2.0 3,449,347 + Psest_3282 0.37 +0.7 3,449,348 - Psest_3282 0.37 -0.3 3,449,464 - Psest_3282 0.48 -1.0 3,449,464 - Psest_3282 0.48 +1.0 3,449,524 + Psest_3282 0.54 -1.0 3,449,524 + Psest_3282 0.54 -2.0 3,449,524 + Psest_3282 0.54 -0.5 3,449,525 - Psest_3282 0.54 +0.9 3,449,525 - Psest_3282 0.54 -0.4 3,449,525 - Psest_3282 0.54 +2.5 3,449,535 - Psest_3282 0.55 +2.3 3,449,591 + Psest_3282 0.61 +1.6 3,449,591 + Psest_3282 0.61 -0.3 3,449,592 - Psest_3282 0.61 -0.5 3,449,592 - Psest_3282 0.61 +0.4 3,449,693 - Psest_3282 0.70 -1.4 3,449,693 - Psest_3282 0.70 -1.0 3,449,693 - Psest_3282 0.70 -0.3 3,449,693 - Psest_3282 0.70 -2.2 3,449,752 + Psest_3282 0.76 -0.7 3,449,755 - Psest_3282 0.76 -1.1 3,449,789 - Psest_3282 0.80 +0.4 3,449,789 - Psest_3282 0.80 -0.1 3,449,791 - Psest_3282 0.80 +1.9 3,449,791 - Psest_3282 0.80 -0.4 3,449,791 - Psest_3282 0.80 +0.3 3,449,792 + Psest_3282 0.80 +0.7 3,449,792 + Psest_3282 0.80 +2.2 3,449,792 + Psest_3282 0.80 -0.0 3,449,792 + Psest_3282 0.80 +0.4 3,449,792 + Psest_3282 0.80 +0.0 3,449,792 + Psest_3282 0.80 +1.5 3,449,793 - Psest_3282 0.80 +3.7 3,449,793 - Psest_3282 0.80 +1.1 3,449,793 - Psest_3282 0.80 -0.3 3,449,793 - Psest_3282 0.80 -0.3 3,449,793 - Psest_3282 0.80 +0.9 3,449,793 - Psest_3282 0.80 +0.3 3,449,793 - Psest_3282 0.80 +0.3 3,449,793 - Psest_3282 0.80 +2.1 3,449,842 + Psest_3282 0.85 -0.8 3,449,842 + Psest_3282 0.85 +0.4 3,449,843 - Psest_3282 0.85 -0.8 3,449,843 - Psest_3282 0.85 -1.7 3,449,843 - Psest_3282 0.85 +2.9 3,449,919 + -1.9 3,449,919 + -1.7 3,449,920 - +0.3 3,449,930 + +1.0 3,449,960 + +1.5 3,449,960 + +0.7 3,450,066 - +1.0 3,450,110 + +0.8 3,450,110 + -0.0 3,450,125 - +1.5 3,450,125 - -0.5 3,450,125 - -0.5 3,450,173 + Psest_3283 0.15 -0.6 3,450,280 - Psest_3283 0.31 -1.0 3,450,281 + Psest_3283 0.31 +1.5 3,450,281 + Psest_3283 0.31 +1.1 3,450,281 + Psest_3283 0.31 +1.5 3,450,281 + Psest_3283 0.31 -2.0 3,450,281 + Psest_3283 0.31 -0.5 3,450,282 - Psest_3283 0.31 +2.1 3,450,282 - Psest_3283 0.31 -0.3 3,450,282 - Psest_3283 0.31 -0.5 3,450,297 + Psest_3283 0.33 -0.5 3,450,297 + Psest_3283 0.33 -0.9 3,450,298 - Psest_3283 0.34 +2.1 3,450,298 - Psest_3283 0.34 -0.1 3,450,298 - Psest_3283 0.34 +0.6 3,450,396 - Psest_3283 0.48 +0.8 3,450,479 + Psest_3283 0.60 -1.8 3,450,479 + Psest_3283 0.60 -0.3 3,450,480 - Psest_3283 0.60 -0.4 3,450,491 + Psest_3283 0.62 -0.2 3,450,491 + Psest_3283 0.62 -0.6 3,450,492 - Psest_3283 0.62 -0.1 3,450,558 - Psest_3283 0.72 +0.6 3,450,563 + Psest_3283 0.73 -0.8 3,450,564 - Psest_3283 0.73 +0.0 3,450,614 - Psest_3283 0.80 -0.5 3,450,615 + Psest_3283 0.80 -0.9 3,450,615 + Psest_3283 0.80 -0.0 3,450,615 + Psest_3283 0.80 -0.5 3,450,615 + Psest_3283 0.80 -1.4 3,450,615 + Psest_3283 0.80 -1.6 3,450,616 - Psest_3283 0.81 +0.5 3,450,616 - Psest_3283 0.81 +1.1 3,450,616 - Psest_3283 0.81 -0.8 3,450,616 - Psest_3283 0.81 -0.3 3,450,626 + Psest_3283 0.82 +0.6 3,450,627 - Psest_3283 0.82 -1.8 3,450,645 + Psest_3283 0.85 -0.5 3,450,645 + Psest_3283 0.85 -0.8 3,450,935 - Psest_3284 0.79 -2.6 3,451,620 + -0.6 3,451,620 + -1.0 3,451,620 + -2.8 3,451,621 - +1.7 3,451,623 + +0.5 3,451,624 - -0.1 3,451,657 + -0.1 3,451,665 - -1.5 3,451,685 + +2.5 3,451,686 - -0.3 3,451,745 + +0.1 3,451,745 + +0.5 3,451,746 - -1.6 3,451,746 - -1.5
Or see this region's nucleotide sequence