Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0684

Experiment: Lactate-nitrate; anaerobic; cadmium stress sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0682 and Psest_0683 are separated by 92 nucleotidesPsest_0683 and Psest_0684 are separated by 11 nucleotidesPsest_0684 and Psest_0685 are separated by 98 nucleotides Psest_0682: Psest_0682 - tRNA dimethylallyltransferase, at 745,683 to 746,654 _0682 Psest_0683: Psest_0683 - RNA chaperone Hfq, at 746,747 to 747,001 _0683 Psest_0684: Psest_0684 - GTP-binding protein HflX, at 747,013 to 748,314 _0684 Psest_0685: Psest_0685 - HflK protein, at 748,413 to 749,591 _0685 Position (kb) 747 748 749Strain fitness (log2 ratio) -2 -1 0 1at 746.625 kb on + strandat 746.706 kb on + strandat 746.714 kb on + strandat 747.332 kb on + strand, within Psest_0684at 747.332 kb on + strand, within Psest_0684at 747.414 kb on + strand, within Psest_0684at 747.525 kb on + strand, within Psest_0684at 747.525 kb on + strand, within Psest_0684at 747.525 kb on + strand, within Psest_0684at 747.628 kb on + strand, within Psest_0684at 747.961 kb on + strand, within Psest_0684at 747.961 kb on + strand, within Psest_0684at 747.961 kb on + strand, within Psest_0684at 747.961 kb on + strand, within Psest_0684at 748.312 kb on + strandat 748.388 kb on + strandat 748.388 kb on + strandat 748.394 kb on + strandat 748.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cadmium stress sample1
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746,625 + -0.7
746,706 + +0.3
746,714 + +0.3
747,332 + Psest_0684 0.25 -0.3
747,332 + Psest_0684 0.25 -0.8
747,414 + Psest_0684 0.31 -0.7
747,525 + Psest_0684 0.39 -1.9
747,525 + Psest_0684 0.39 -0.6
747,525 + Psest_0684 0.39 -0.7
747,628 + Psest_0684 0.47 -0.3
747,961 + Psest_0684 0.73 -0.2
747,961 + Psest_0684 0.73 -0.6
747,961 + Psest_0684 0.73 -2.1
747,961 + Psest_0684 0.73 +0.3
748,312 + -0.1
748,388 + -0.1
748,388 + -1.2
748,394 + -1.0
748,394 + -0.4

Or see this region's nucleotide sequence