Experiment: Lactate-nitrate; anaerobic; copper stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0876 and Psest_0877 are separated by 40 nucleotides Psest_0877 and Psest_0879 are separated by 816 nucleotides
Psest_0876: Psest_0876 - Type III restriction enzyme, res subunit./Type I restriction enzyme R protein N terminus (HSDR_N)., at 953,599 to 956,793
_0876
Psest_0877: Psest_0877 - Restriction endonuclease, at 956,834 to 957,745
_0877
Psest_0879: Psest_0879 - Transcriptional regulator, at 958,562 to 959,458
_0879
Position (kb) 956
957
958 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 955.837 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.885 kb on + strand, within Psest_0876 at 955.885 kb on + strand, within Psest_0876 at 955.885 kb on + strand, within Psest_0876 at 955.886 kb on - strand, within Psest_0876 at 955.886 kb on - strand, within Psest_0876 at 955.886 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.996 kb on + strand, within Psest_0876 at 955.997 kb on - strand, within Psest_0876 at 956.231 kb on - strand, within Psest_0876 at 956.404 kb on + strand, within Psest_0876 at 956.404 kb on + strand, within Psest_0876 at 956.404 kb on + strand, within Psest_0876 at 956.405 kb on - strand, within Psest_0876 at 956.405 kb on - strand, within Psest_0876 at 956.440 kb on - strand, within Psest_0876 at 956.496 kb on + strand at 956.496 kb on + strand at 956.497 kb on - strand at 956.497 kb on - strand at 956.740 kb on + strand at 956.740 kb on + strand at 956.741 kb on - strand at 956.741 kb on - strand at 956.741 kb on - strand at 956.802 kb on + strand at 956.802 kb on + strand at 956.803 kb on - strand at 956.803 kb on - strand at 956.803 kb on - strand at 956.806 kb on + strand at 956.806 kb on + strand at 956.807 kb on - strand at 956.807 kb on - strand at 956.937 kb on + strand, within Psest_0877 at 956.938 kb on - strand, within Psest_0877 at 956.938 kb on - strand, within Psest_0877 at 957.026 kb on + strand, within Psest_0877 at 957.170 kb on - strand, within Psest_0877 at 957.170 kb on - strand, within Psest_0877 at 957.366 kb on - strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.513 kb on + strand, within Psest_0877 at 957.514 kb on - strand, within Psest_0877 at 957.514 kb on - strand, within Psest_0877 at 957.561 kb on + strand, within Psest_0877 at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.729 kb on - strand at 957.729 kb on - strand at 957.995 kb on + strand at 957.996 kb on - strand at 958.041 kb on + strand at 958.041 kb on + strand at 958.041 kb on + strand at 958.041 kb on + strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.081 kb on + strand at 958.081 kb on + strand at 958.115 kb on + strand at 958.115 kb on + strand at 958.116 kb on - strand at 958.116 kb on - strand at 958.180 kb on - strand at 958.190 kb on + strand at 958.190 kb on + strand at 958.190 kb on + strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.211 kb on + strand at 958.211 kb on + strand at 958.211 kb on + strand at 958.212 kb on - strand at 958.212 kb on - strand at 958.212 kb on - strand at 958.212 kb on - strand at 958.238 kb on + strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.257 kb on + strand at 958.258 kb on - strand at 958.265 kb on + strand at 958.266 kb on - strand at 958.266 kb on - strand at 958.266 kb on - strand at 958.388 kb on + strand at 958.465 kb on + strand at 958.465 kb on + strand at 958.465 kb on + strand at 958.465 kb on + strand at 958.466 kb on - strand at 958.466 kb on - strand at 958.466 kb on - strand at 958.466 kb on - strand at 958.511 kb on - strand at 958.530 kb on + strand at 958.680 kb on + strand, within Psest_0879 at 958.745 kb on + strand, within Psest_0879
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3 remove 955,837 + Psest_0876 0.70 -0.9 955,840 + Psest_0876 0.70 -0.4 955,840 + Psest_0876 0.70 -0.0 955,840 + Psest_0876 0.70 +1.1 955,840 + Psest_0876 0.70 -1.0 955,841 - Psest_0876 0.70 -1.0 955,841 - Psest_0876 0.70 -1.5 955,841 - Psest_0876 0.70 +1.2 955,841 - Psest_0876 0.70 -1.5 955,841 - Psest_0876 0.70 +1.1 955,841 - Psest_0876 0.70 +0.2 955,841 - Psest_0876 0.70 -0.9 955,841 - Psest_0876 0.70 -1.0 955,885 + Psest_0876 0.72 +0.6 955,885 + Psest_0876 0.72 +0.3 955,885 + Psest_0876 0.72 -1.9 955,886 - Psest_0876 0.72 +0.1 955,886 - Psest_0876 0.72 -0.2 955,886 - Psest_0876 0.72 +0.1 955,922 - Psest_0876 0.73 -1.4 955,922 - Psest_0876 0.73 +0.2 955,922 - Psest_0876 0.73 +0.3 955,922 - Psest_0876 0.73 +0.7 955,993 + Psest_0876 0.75 -1.3 955,993 + Psest_0876 0.75 -0.4 955,993 + Psest_0876 0.75 +0.3 955,993 + Psest_0876 0.75 -1.3 955,993 + Psest_0876 0.75 -2.6 955,994 - Psest_0876 0.75 -0.4 955,994 - Psest_0876 0.75 +0.5 955,994 - Psest_0876 0.75 -0.5 955,994 - Psest_0876 0.75 -1.5 955,994 - Psest_0876 0.75 +1.3 955,994 - Psest_0876 0.75 -0.5 955,994 - Psest_0876 0.75 +0.5 955,996 + Psest_0876 0.75 +1.0 955,997 - Psest_0876 0.75 -1.2 956,231 - Psest_0876 0.82 +0.1 956,404 + Psest_0876 0.88 +1.6 956,404 + Psest_0876 0.88 +1.0 956,404 + Psest_0876 0.88 +0.3 956,405 - Psest_0876 0.88 -0.3 956,405 - Psest_0876 0.88 -0.9 956,440 - Psest_0876 0.89 -0.7 956,496 + +0.3 956,496 + +2.7 956,497 - -1.3 956,497 - -0.3 956,740 + +0.2 956,740 + -2.3 956,741 - -0.1 956,741 - +0.3 956,741 - +2.0 956,802 + -2.0 956,802 + -0.2 956,803 - -0.4 956,803 - -0.7 956,803 - +0.3 956,806 + -1.2 956,806 + -1.2 956,807 - -2.0 956,807 - +0.9 956,937 + Psest_0877 0.11 +0.6 956,938 - Psest_0877 0.11 +1.1 956,938 - Psest_0877 0.11 -0.1 957,026 + Psest_0877 0.21 +0.3 957,170 - Psest_0877 0.37 -2.5 957,170 - Psest_0877 0.37 +0.2 957,366 - Psest_0877 0.58 -0.2 957,467 + Psest_0877 0.69 +1.3 957,467 + Psest_0877 0.69 +0.5 957,467 + Psest_0877 0.69 +1.5 957,467 + Psest_0877 0.69 +2.6 957,468 - Psest_0877 0.70 +0.3 957,468 - Psest_0877 0.70 +1.6 957,468 - Psest_0877 0.70 -1.0 957,468 - Psest_0877 0.70 -0.7 957,468 - Psest_0877 0.70 +1.8 957,513 + Psest_0877 0.74 +0.8 957,514 - Psest_0877 0.75 +0.3 957,514 - Psest_0877 0.75 +2.3 957,561 + Psest_0877 0.80 +0.7 957,701 + +0.5 957,701 + +0.5 957,701 + +0.3 957,701 + +5.2 957,701 + -0.2 957,701 + +0.2 957,701 + -0.5 957,701 + -1.2 957,702 - +0.6 957,702 - -1.7 957,702 - +0.8 957,702 - -1.3 957,702 - -0.7 957,702 - -0.2 957,729 - -1.7 957,729 - -1.3 957,995 + -0.7 957,996 - +1.1 958,041 + -1.5 958,041 + -1.9 958,041 + -4.4 958,041 + -0.9 958,042 - -0.4 958,042 - +0.6 958,042 - +0.3 958,042 - +0.5 958,042 - +1.1 958,042 - +2.6 958,042 - -0.9 958,043 + +1.2 958,043 + -0.3 958,043 + +1.1 958,043 + -1.3 958,043 + -1.3 958,044 - +1.4 958,044 - +1.3 958,044 - -0.9 958,044 - -0.7 958,044 - +2.3 958,044 - +0.6 958,044 - +0.7 958,044 - +1.3 958,044 - +0.6 958,044 - -0.1 958,081 + -1.3 958,081 + +0.3 958,115 + +0.7 958,115 + -0.9 958,116 - -1.0 958,116 - +0.4 958,180 - -0.3 958,190 + -0.5 958,190 + -1.4 958,190 + -1.1 958,191 - +0.2 958,191 - -0.5 958,191 - +0.8 958,191 - +1.7 958,191 - +0.3 958,211 + -2.0 958,211 + +0.1 958,211 + -2.3 958,212 - -0.1 958,212 - -2.0 958,212 - +0.6 958,212 - +1.7 958,238 + +0.1 958,239 - -2.2 958,239 - -0.3 958,257 + -0.4 958,258 - -0.0 958,265 + +0.3 958,266 - +0.3 958,266 - +0.1 958,266 - +0.2 958,388 + +0.8 958,465 + -0.7 958,465 + -0.5 958,465 + -1.2 958,465 + +1.2 958,466 - -1.3 958,466 - +0.0 958,466 - -1.1 958,466 - +1.3 958,511 - +0.4 958,530 + -0.6 958,680 + Psest_0879 0.13 +1.3 958,745 + Psest_0879 0.20 -0.3
Or see this region's nucleotide sequence