Experiment: Lactate-nitrate; anaerobic; copper stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0623 and Psest_0624 are separated by 25 nucleotides Psest_0624 and Psest_0626 are separated by 963 nucleotides
Psest_0623: Psest_0623 - Arsenite efflux pump ACR3 and related permeases, at 674,186 to 675,169
_0623
Psest_0624: Psest_0624 - hypothetical protein, at 675,195 to 675,557
_0624
Psest_0626: Psest_0626 - hypothetical protein, at 676,521 to 678,179
_0626
Position (kb) 675
676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 674.241 kb on + strand at 674.242 kb on - strand at 674.249 kb on + strand at 674.249 kb on + strand at 674.249 kb on + strand at 674.250 kb on - strand at 674.250 kb on - strand at 674.250 kb on - strand at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.442 kb on + strand, within Psest_0623 at 674.443 kb on - strand, within Psest_0623 at 674.443 kb on - strand, within Psest_0623 at 674.536 kb on + strand, within Psest_0623 at 674.536 kb on + strand, within Psest_0623 at 674.536 kb on + strand, within Psest_0623 at 674.537 kb on - strand, within Psest_0623 at 674.543 kb on + strand, within Psest_0623 at 674.543 kb on + strand, within Psest_0623 at 674.543 kb on + strand, within Psest_0623 at 674.544 kb on - strand, within Psest_0623 at 674.642 kb on + strand, within Psest_0623 at 674.642 kb on + strand, within Psest_0623 at 674.643 kb on - strand, within Psest_0623 at 674.838 kb on + strand, within Psest_0623 at 674.910 kb on + strand, within Psest_0623 at 674.926 kb on - strand, within Psest_0623 at 674.928 kb on + strand, within Psest_0623 at 675.005 kb on - strand, within Psest_0623 at 675.030 kb on + strand, within Psest_0623 at 675.030 kb on + strand, within Psest_0623 at 675.030 kb on + strand, within Psest_0623 at 675.031 kb on - strand, within Psest_0623 at 675.031 kb on - strand, within Psest_0623 at 675.031 kb on - strand, within Psest_0623 at 675.095 kb on - strand at 675.109 kb on - strand at 675.109 kb on - strand at 675.131 kb on + strand at 675.131 kb on + strand at 675.131 kb on + strand at 675.132 kb on - strand at 675.132 kb on - strand at 675.132 kb on - strand at 675.132 kb on - strand at 675.135 kb on + strand at 675.135 kb on + strand at 675.136 kb on - strand at 675.288 kb on + strand, within Psest_0624 at 675.288 kb on + strand, within Psest_0624 at 675.289 kb on - strand, within Psest_0624 at 675.289 kb on - strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.335 kb on + strand, within Psest_0624 at 675.335 kb on + strand, within Psest_0624 at 675.335 kb on + strand, within Psest_0624 at 675.336 kb on - strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.384 kb on + strand, within Psest_0624 at 675.524 kb on + strand at 675.525 kb on - strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.583 kb on + strand at 675.583 kb on + strand at 675.583 kb on + strand at 675.584 kb on - strand at 675.659 kb on + strand at 675.705 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.734 kb on + strand at 675.767 kb on + strand at 675.825 kb on + strand at 675.825 kb on + strand at 675.825 kb on + strand at 675.858 kb on + strand at 675.921 kb on - strand at 675.929 kb on + strand at 675.929 kb on + strand at 675.929 kb on + strand at 675.951 kb on - strand at 675.953 kb on - strand at 676.040 kb on + strand at 676.040 kb on + strand at 676.041 kb on - strand at 676.041 kb on - strand at 676.058 kb on + strand at 676.064 kb on + strand at 676.065 kb on - strand at 676.097 kb on + strand at 676.206 kb on - strand at 676.310 kb on - strand at 676.371 kb on + strand at 676.371 kb on + strand at 676.371 kb on + strand at 676.372 kb on - strand at 676.482 kb on + strand at 676.483 kb on - strand at 676.483 kb on - strand at 676.485 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3 remove 674,241 + +0.7 674,242 - -1.2 674,249 + -1.0 674,249 + -0.4 674,249 + -0.0 674,250 - -0.6 674,250 - +0.0 674,250 - -0.5 674,351 + Psest_0623 0.17 -2.4 674,351 + Psest_0623 0.17 -0.4 674,351 + Psest_0623 0.17 -1.4 674,351 + Psest_0623 0.17 -0.2 674,351 + Psest_0623 0.17 -0.7 674,351 + Psest_0623 0.17 -1.6 674,351 + Psest_0623 0.17 +1.6 674,351 + Psest_0623 0.17 -0.4 674,351 + Psest_0623 0.17 -0.3 674,351 + Psest_0623 0.17 -1.0 674,351 + Psest_0623 0.17 +2.2 674,351 + Psest_0623 0.17 +0.1 674,351 + Psest_0623 0.17 -2.8 674,351 + Psest_0623 0.17 -1.6 674,351 + Psest_0623 0.17 -0.2 674,351 + Psest_0623 0.17 -1.4 674,351 + Psest_0623 0.17 -0.7 674,351 + Psest_0623 0.17 -0.7 674,351 + Psest_0623 0.17 -2.9 674,352 - Psest_0623 0.17 -0.5 674,352 - Psest_0623 0.17 +0.9 674,352 - Psest_0623 0.17 +1.6 674,352 - Psest_0623 0.17 -0.3 674,352 - Psest_0623 0.17 -0.6 674,352 - Psest_0623 0.17 +0.3 674,352 - Psest_0623 0.17 -0.4 674,352 - Psest_0623 0.17 -0.0 674,352 - Psest_0623 0.17 -0.5 674,352 - Psest_0623 0.17 +0.5 674,352 - Psest_0623 0.17 -2.4 674,352 - Psest_0623 0.17 -0.8 674,352 - Psest_0623 0.17 -0.1 674,352 - Psest_0623 0.17 -1.2 674,352 - Psest_0623 0.17 -0.2 674,352 - Psest_0623 0.17 -1.4 674,442 + Psest_0623 0.26 -1.4 674,443 - Psest_0623 0.26 +0.2 674,443 - Psest_0623 0.26 +0.4 674,536 + Psest_0623 0.36 -1.0 674,536 + Psest_0623 0.36 -2.6 674,536 + Psest_0623 0.36 -0.0 674,537 - Psest_0623 0.36 -0.1 674,543 + Psest_0623 0.36 +1.1 674,543 + Psest_0623 0.36 -2.1 674,543 + Psest_0623 0.36 -2.7 674,544 - Psest_0623 0.36 +0.5 674,642 + Psest_0623 0.46 -0.1 674,642 + Psest_0623 0.46 -1.2 674,643 - Psest_0623 0.46 -2.5 674,838 + Psest_0623 0.66 +2.5 674,910 + Psest_0623 0.74 -0.6 674,926 - Psest_0623 0.75 +1.0 674,928 + Psest_0623 0.75 +1.0 675,005 - Psest_0623 0.83 -0.5 675,030 + Psest_0623 0.86 +0.1 675,030 + Psest_0623 0.86 -1.1 675,030 + Psest_0623 0.86 -0.0 675,031 - Psest_0623 0.86 -0.9 675,031 - Psest_0623 0.86 -0.6 675,031 - Psest_0623 0.86 -1.9 675,095 - +0.2 675,109 - -0.8 675,109 - -1.2 675,131 + +0.2 675,131 + +0.6 675,131 + -2.8 675,132 - +2.0 675,132 - -0.1 675,132 - -0.9 675,132 - -0.7 675,135 + -2.0 675,135 + +0.2 675,136 - +2.2 675,288 + Psest_0624 0.26 -0.4 675,288 + Psest_0624 0.26 -0.2 675,289 - Psest_0624 0.26 -1.4 675,289 - Psest_0624 0.26 -0.8 675,311 + Psest_0624 0.32 -0.1 675,311 + Psest_0624 0.32 +3.8 675,311 + Psest_0624 0.32 +0.2 675,311 + Psest_0624 0.32 -0.7 675,312 - Psest_0624 0.32 -0.8 675,312 - Psest_0624 0.32 -0.6 675,312 - Psest_0624 0.32 -0.2 675,312 - Psest_0624 0.32 +0.9 675,335 + Psest_0624 0.39 -1.7 675,335 + Psest_0624 0.39 +0.0 675,335 + Psest_0624 0.39 +0.3 675,336 - Psest_0624 0.39 -1.0 675,354 + Psest_0624 0.44 +0.4 675,354 + Psest_0624 0.44 -1.6 675,354 + Psest_0624 0.44 -0.5 675,354 + Psest_0624 0.44 -0.7 675,355 - Psest_0624 0.44 -0.7 675,355 - Psest_0624 0.44 -0.8 675,355 - Psest_0624 0.44 -0.9 675,355 - Psest_0624 0.44 -2.0 675,355 - Psest_0624 0.44 -0.4 675,355 - Psest_0624 0.44 -0.2 675,384 + Psest_0624 0.52 +0.1 675,524 + -1.4 675,525 - -1.6 675,575 + +0.5 675,575 + -0.8 675,575 + -0.9 675,575 + -0.9 675,575 + -1.1 675,575 + +0.5 675,575 + -2.4 675,575 + +2.2 675,575 + -1.2 675,575 + -1.0 675,576 - +0.2 675,576 - -3.0 675,576 - -0.0 675,576 - -0.1 675,576 - -1.0 675,576 - -2.0 675,576 - +0.1 675,583 + -0.0 675,583 + -0.9 675,583 + +0.1 675,584 - -0.8 675,659 + -1.6 675,705 + -2.1 675,730 + -0.1 675,730 + +0.9 675,730 + -1.7 675,730 + +0.8 675,730 + -1.4 675,730 + +0.1 675,730 + -0.0 675,730 + -0.2 675,730 + -1.2 675,730 + +0.7 675,730 + -0.2 675,730 + -1.8 675,730 + -0.1 675,730 + -0.9 675,730 + -0.6 675,730 + +2.6 675,731 - -0.7 675,731 - +0.2 675,731 - +0.2 675,731 - -0.2 675,731 - -0.9 675,731 - -0.1 675,731 - +1.3 675,731 - -0.4 675,734 + -0.3 675,767 + -0.9 675,825 + -0.3 675,825 + +2.4 675,825 + +0.1 675,858 + +1.8 675,921 - +0.1 675,929 + -1.8 675,929 + +0.9 675,929 + -3.1 675,951 - -0.0 675,953 - -0.1 676,040 + +0.6 676,040 + -1.2 676,041 - -0.4 676,041 - -3.6 676,058 + -0.6 676,064 + -2.3 676,065 - -1.0 676,097 + -0.3 676,206 - -0.6 676,310 - -0.5 676,371 + -0.3 676,371 + -1.1 676,371 + +0.4 676,372 - -3.9 676,482 + -0.4 676,483 - +0.5 676,483 - -0.5 676,485 + -1.3
Or see this region's nucleotide sequence