Experiment: Lactate-nitrate; anaerobic; copper stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0597 and Psest_0598 overlap by 4 nucleotides Psest_0598 and Psest_0600 are separated by 559 nucleotides
Psest_0597: Psest_0597 - RND family efflux transporter, MFP subunit, at 648,093 to 649,544
_0597
Psest_0598: Psest_0598 - Outer membrane protein, at 649,541 to 650,794
_0598
Psest_0600: Psest_0600 - copper-(or silver)-translocating P-type ATPase, at 651,354 to 653,717
_0600
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 648.671 kb on + strand, within Psest_0597 at 648.672 kb on - strand, within Psest_0597 at 648.696 kb on + strand, within Psest_0597 at 648.697 kb on - strand, within Psest_0597 at 648.699 kb on + strand, within Psest_0597 at 648.700 kb on - strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.833 kb on + strand, within Psest_0597 at 648.834 kb on - strand, within Psest_0597 at 648.861 kb on + strand, within Psest_0597 at 648.906 kb on + strand, within Psest_0597 at 648.907 kb on - strand, within Psest_0597 at 648.954 kb on + strand, within Psest_0597 at 648.955 kb on - strand, within Psest_0597 at 648.955 kb on - strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.052 kb on - strand, within Psest_0597 at 649.052 kb on - strand, within Psest_0597 at 649.139 kb on - strand, within Psest_0597 at 649.349 kb on + strand, within Psest_0597 at 649.377 kb on - strand, within Psest_0597 at 649.400 kb on + strand at 649.408 kb on + strand at 649.408 kb on + strand at 649.408 kb on + strand at 649.409 kb on - strand at 649.414 kb on + strand at 649.414 kb on + strand at 649.415 kb on - strand at 649.490 kb on + strand at 649.490 kb on + strand at 649.553 kb on - strand at 649.612 kb on + strand at 649.612 kb on + strand at 649.612 kb on + strand at 649.613 kb on - strand at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.731 kb on - strand, within Psest_0598 at 649.774 kb on - strand, within Psest_0598 at 649.806 kb on + strand, within Psest_0598 at 649.806 kb on + strand, within Psest_0598 at 649.807 kb on - strand, within Psest_0598 at 649.962 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.090 kb on - strand, within Psest_0598 at 650.141 kb on + strand, within Psest_0598 at 650.141 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.440 kb on + strand, within Psest_0598 at 650.441 kb on - strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.585 kb on - strand, within Psest_0598 at 650.702 kb on + strand at 650.702 kb on + strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.763 kb on + strand at 650.763 kb on + strand at 650.763 kb on + strand at 650.779 kb on - strand at 650.782 kb on + strand at 650.782 kb on + strand at 650.783 kb on - strand at 650.872 kb on - strand at 650.872 kb on - strand at 650.872 kb on - strand at 650.872 kb on - strand at 650.874 kb on - strand at 650.917 kb on + strand at 650.946 kb on - strand at 650.989 kb on + strand at 651.009 kb on + strand at 651.009 kb on + strand at 651.009 kb on + strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.257 kb on + strand at 651.258 kb on - strand at 651.258 kb on - strand at 651.267 kb on + strand at 651.268 kb on - strand at 651.335 kb on - strand at 651.335 kb on - strand at 651.340 kb on + strand at 651.360 kb on + strand at 651.361 kb on - strand at 651.361 kb on - strand at 651.361 kb on - strand at 651.466 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.506 kb on - strand at 651.506 kb on - strand at 651.506 kb on - strand at 651.506 kb on - strand at 651.509 kb on + strand at 651.509 kb on + strand at 651.509 kb on + strand at 651.509 kb on + strand at 651.510 kb on - strand at 651.510 kb on - strand at 651.537 kb on - strand at 651.605 kb on + strand, within Psest_0600 at 651.606 kb on - strand, within Psest_0600 at 651.651 kb on + strand, within Psest_0600 at 651.651 kb on + strand, within Psest_0600 at 651.691 kb on - strand, within Psest_0600 at 651.714 kb on + strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.724 kb on - strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.738 kb on - strand, within Psest_0600
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3 remove 648,671 + Psest_0597 0.40 -1.5 648,672 - Psest_0597 0.40 +0.6 648,696 + Psest_0597 0.42 -1.0 648,697 - Psest_0597 0.42 -1.4 648,699 + Psest_0597 0.42 -0.4 648,700 - Psest_0597 0.42 +0.1 648,816 + Psest_0597 0.50 +0.3 648,816 + Psest_0597 0.50 -0.3 648,816 + Psest_0597 0.50 -1.9 648,817 - Psest_0597 0.50 +1.3 648,817 - Psest_0597 0.50 +0.6 648,817 - Psest_0597 0.50 -0.3 648,833 + Psest_0597 0.51 +2.7 648,834 - Psest_0597 0.51 +0.3 648,861 + Psest_0597 0.53 -0.5 648,906 + Psest_0597 0.56 -1.2 648,907 - Psest_0597 0.56 -0.7 648,954 + Psest_0597 0.59 -2.2 648,955 - Psest_0597 0.59 -1.3 648,955 - Psest_0597 0.59 -0.1 649,051 + Psest_0597 0.66 -0.7 649,051 + Psest_0597 0.66 -0.7 649,051 + Psest_0597 0.66 -1.4 649,052 - Psest_0597 0.66 -1.5 649,052 - Psest_0597 0.66 +1.3 649,139 - Psest_0597 0.72 -1.6 649,349 + Psest_0597 0.87 +2.8 649,377 - Psest_0597 0.88 +0.6 649,400 + +1.8 649,408 + -1.3 649,408 + -1.0 649,408 + -0.3 649,409 - +1.1 649,414 + -1.7 649,414 + -1.4 649,415 - -0.7 649,490 + -0.8 649,490 + +1.0 649,553 - -0.8 649,612 + -0.3 649,612 + -3.0 649,612 + +0.1 649,613 - -1.2 649,730 + Psest_0598 0.15 -0.5 649,730 + Psest_0598 0.15 -0.1 649,730 + Psest_0598 0.15 +0.2 649,730 + Psest_0598 0.15 -2.5 649,730 + Psest_0598 0.15 -1.6 649,731 - Psest_0598 0.15 +1.0 649,774 - Psest_0598 0.19 -1.4 649,806 + Psest_0598 0.21 -0.5 649,806 + Psest_0598 0.21 -0.7 649,807 - Psest_0598 0.21 +0.5 649,962 + Psest_0598 0.34 -0.2 650,085 + Psest_0598 0.43 -0.1 650,085 + Psest_0598 0.43 +0.8 650,085 + Psest_0598 0.43 -1.4 650,085 + Psest_0598 0.43 -0.2 650,085 + Psest_0598 0.43 -0.3 650,086 - Psest_0598 0.43 +0.7 650,086 - Psest_0598 0.43 -1.7 650,086 - Psest_0598 0.43 -0.4 650,089 + Psest_0598 0.44 -1.8 650,089 + Psest_0598 0.44 -1.1 650,089 + Psest_0598 0.44 -0.9 650,089 + Psest_0598 0.44 -1.2 650,090 - Psest_0598 0.44 -0.3 650,141 + Psest_0598 0.48 -0.7 650,141 + Psest_0598 0.48 -2.8 650,243 + Psest_0598 0.56 +0.9 650,243 + Psest_0598 0.56 -1.9 650,243 + Psest_0598 0.56 -2.9 650,244 - Psest_0598 0.56 -0.2 650,244 - Psest_0598 0.56 +1.4 650,244 - Psest_0598 0.56 -1.0 650,244 - Psest_0598 0.56 -2.0 650,244 - Psest_0598 0.56 +0.2 650,244 - Psest_0598 0.56 -0.2 650,320 - Psest_0598 0.62 +0.7 650,320 - Psest_0598 0.62 -1.7 650,320 - Psest_0598 0.62 +0.5 650,339 + Psest_0598 0.64 -0.8 650,339 + Psest_0598 0.64 -1.9 650,339 + Psest_0598 0.64 +0.3 650,339 + Psest_0598 0.64 -0.7 650,340 - Psest_0598 0.64 +0.6 650,340 - Psest_0598 0.64 +0.4 650,340 - Psest_0598 0.64 -0.3 650,440 + Psest_0598 0.72 +0.3 650,441 - Psest_0598 0.72 -0.1 650,584 + Psest_0598 0.83 +0.7 650,584 + Psest_0598 0.83 -1.6 650,584 + Psest_0598 0.83 +0.5 650,584 + Psest_0598 0.83 +0.9 650,585 - Psest_0598 0.83 +1.3 650,702 + -1.6 650,702 + -1.7 650,703 - -1.8 650,703 - +0.0 650,703 - +0.9 650,703 - -1.3 650,703 - -0.4 650,703 - +2.0 650,763 + -1.2 650,763 + -0.6 650,763 + -0.6 650,779 - -0.7 650,782 + -2.3 650,782 + +1.0 650,783 - +0.9 650,872 - -0.7 650,872 - -1.3 650,872 - +0.1 650,872 - -0.3 650,874 - +0.3 650,917 + -2.2 650,946 - +0.1 650,989 + -1.3 651,009 + -1.3 651,009 + +1.5 651,009 + -2.1 651,010 - -2.0 651,010 - -1.2 651,010 - -1.3 651,010 - -0.9 651,010 - +0.1 651,010 - -0.9 651,257 + +0.9 651,258 - -0.3 651,258 - -1.7 651,267 + -1.1 651,268 - -1.4 651,335 - +0.1 651,335 - +1.1 651,340 + -0.8 651,360 + -0.8 651,361 - -1.5 651,361 - -0.1 651,361 - +1.1 651,466 + -1.2 651,505 + +4.5 651,505 + -0.1 651,505 + -0.5 651,505 + -1.7 651,505 + -1.3 651,506 - +0.7 651,506 - +0.5 651,506 - -0.6 651,506 - -1.0 651,509 + -1.0 651,509 + -0.1 651,509 + -2.2 651,509 + -0.0 651,510 - +2.9 651,510 - +0.3 651,537 - -0.3 651,605 + Psest_0600 0.11 -0.2 651,606 - Psest_0600 0.11 -1.6 651,651 + Psest_0600 0.13 -0.5 651,651 + Psest_0600 0.13 +1.3 651,691 - Psest_0600 0.14 -0.3 651,714 + Psest_0600 0.15 -0.5 651,715 - Psest_0600 0.15 +1.9 651,715 - Psest_0600 0.15 -0.0 651,715 - Psest_0600 0.15 +0.5 651,715 - Psest_0600 0.15 -1.3 651,719 + Psest_0600 0.15 -1.2 651,719 + Psest_0600 0.15 -0.9 651,719 + Psest_0600 0.15 -2.5 651,719 + Psest_0600 0.15 +0.3 651,720 - Psest_0600 0.15 +0.8 651,720 - Psest_0600 0.15 -1.6 651,720 - Psest_0600 0.15 -1.3 651,720 - Psest_0600 0.15 +2.0 651,720 - Psest_0600 0.15 -2.4 651,724 - Psest_0600 0.16 +0.3 651,732 + Psest_0600 0.16 -1.9 651,732 + Psest_0600 0.16 -0.7 651,732 + Psest_0600 0.16 -0.4 651,732 + Psest_0600 0.16 -1.7 651,733 - Psest_0600 0.16 +0.9 651,733 - Psest_0600 0.16 -0.7 651,733 - Psest_0600 0.16 -0.2 651,733 - Psest_0600 0.16 -0.9 651,733 - Psest_0600 0.16 -1.7 651,733 - Psest_0600 0.16 -0.9 651,738 - Psest_0600 0.16 +0.4
Or see this region's nucleotide sequence