Experiment: Lactate-nitrate; anaerobic; copper stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0295 and Psest_0296 are separated by 87 nucleotides Psest_0296 and Psest_0297 are separated by 236 nucleotides Psest_0297 and Psest_0298 are separated by 43 nucleotides
Psest_0295: Psest_0295 - TonB family C-terminal domain, at 309,161 to 310,054
_0295
Psest_0296: Psest_0296 - glutathione synthetase, prokaryotic, at 310,142 to 311,092
_0296
Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736
_0297
Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145
_0298
Position (kb) 310
311
312 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 310.257 kb on + strand, within Psest_0296 at 310.257 kb on + strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.268 kb on + strand, within Psest_0296 at 310.491 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.800 kb on + strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.960 kb on - strand, within Psest_0296 at 310.978 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 311.206 kb on + strand at 311.229 kb on + strand at 311.229 kb on + strand at 311.230 kb on - strand at 311.288 kb on + strand at 311.289 kb on - strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.299 kb on + strand at 311.300 kb on - strand at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.417 kb on + strand, within Psest_0297 at 311.418 kb on - strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.505 kb on + strand, within Psest_0297 at 311.506 kb on - strand, within Psest_0297 at 311.506 kb on - strand, within Psest_0297 at 311.629 kb on - strand, within Psest_0297 at 311.629 kb on - strand, within Psest_0297 at 311.768 kb on + strand at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.822 kb on + strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.823 kb on - strand, within Psest_0298 at 311.926 kb on - strand, within Psest_0298 at 312.080 kb on + strand, within Psest_0298 at 312.081 kb on - strand, within Psest_0298
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3 remove 310,257 + Psest_0296 0.12 -3.2 310,257 + Psest_0296 0.12 -1.7 310,258 - Psest_0296 0.12 -2.5 310,258 - Psest_0296 0.12 -1.7 310,258 - Psest_0296 0.12 -3.9 310,258 - Psest_0296 0.12 -1.7 310,268 + Psest_0296 0.13 -6.1 310,491 + Psest_0296 0.37 -4.4 310,791 + Psest_0296 0.68 -3.2 310,791 + Psest_0296 0.68 -2.5 310,791 + Psest_0296 0.68 -2.5 310,791 + Psest_0296 0.68 -3.9 310,800 + Psest_0296 0.69 -0.7 310,801 - Psest_0296 0.69 -3.1 310,801 - Psest_0296 0.69 -2.5 310,801 - Psest_0296 0.69 -1.7 310,801 - Psest_0296 0.69 -2.0 310,806 + Psest_0296 0.70 -1.5 310,806 + Psest_0296 0.70 -2.3 310,806 + Psest_0296 0.70 -3.2 310,806 + Psest_0296 0.70 -2.2 310,806 + Psest_0296 0.70 +2.3 310,806 + Psest_0296 0.70 -2.1 310,807 - Psest_0296 0.70 -1.7 310,807 - Psest_0296 0.70 -2.0 310,807 - Psest_0296 0.70 -3.0 310,960 - Psest_0296 0.86 -1.2 310,978 + Psest_0296 0.88 -3.4 310,980 + Psest_0296 0.88 -2.8 310,980 + Psest_0296 0.88 -4.9 310,980 + Psest_0296 0.88 -4.4 310,980 + Psest_0296 0.88 -1.2 310,980 + Psest_0296 0.88 -2.0 310,980 + Psest_0296 0.88 -4.1 310,980 + Psest_0296 0.88 -4.2 310,981 - Psest_0296 0.88 -3.1 310,981 - Psest_0296 0.88 -3.5 310,981 - Psest_0296 0.88 -3.7 310,981 - Psest_0296 0.88 -1.7 310,981 - Psest_0296 0.88 -1.0 310,981 - Psest_0296 0.88 -0.7 310,981 - Psest_0296 0.88 -4.2 310,981 - Psest_0296 0.88 -1.2 310,981 - Psest_0296 0.88 -4.2 310,981 - Psest_0296 0.88 -3.2 310,981 - Psest_0296 0.88 +0.3 311,206 + -0.6 311,229 + -1.0 311,229 + -1.4 311,230 - -1.8 311,288 + -3.2 311,289 - +1.9 311,299 + +2.3 311,299 + -2.2 311,299 + +0.4 311,299 + +1.6 311,300 - -2.0 311,417 + Psest_0297 0.22 +1.9 311,417 + Psest_0297 0.22 -1.0 311,417 + Psest_0297 0.22 -0.2 311,417 + Psest_0297 0.22 -0.7 311,417 + Psest_0297 0.22 +2.3 311,418 - Psest_0297 0.22 -0.3 311,505 + Psest_0297 0.43 -1.5 311,505 + Psest_0297 0.43 -2.6 311,505 + Psest_0297 0.43 -1.7 311,505 + Psest_0297 0.43 -2.0 311,506 - Psest_0297 0.43 -0.3 311,506 - Psest_0297 0.43 -1.6 311,629 - Psest_0297 0.74 +1.3 311,629 - Psest_0297 0.74 -1.4 311,768 + -0.7 311,822 + Psest_0298 0.11 +0.0 311,822 + Psest_0298 0.11 +0.1 311,822 + Psest_0298 0.11 +2.2 311,822 + Psest_0298 0.11 +1.5 311,822 + Psest_0298 0.11 +1.0 311,822 + Psest_0298 0.11 +1.1 311,822 + Psest_0298 0.11 +2.1 311,822 + Psest_0298 0.11 -2.0 311,823 - Psest_0298 0.12 +1.1 311,823 - Psest_0298 0.12 +3.1 311,823 - Psest_0298 0.12 -0.9 311,823 - Psest_0298 0.12 -1.8 311,926 - Psest_0298 0.40 +2.5 312,080 + Psest_0298 0.82 +2.1 312,081 - Psest_0298 0.82 -0.4
Or see this region's nucleotide sequence