Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2359

Experiment: Lactate-nitrate; anaerobic; copper stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2357 and Psest_2358 overlap by 1 nucleotidesPsest_2358 and Psest_2359 overlap by 4 nucleotidesPsest_2359 and Psest_2360 overlap by 4 nucleotidesPsest_2360 and Psest_2361 overlap by 4 nucleotides Psest_2357: Psest_2357 - Short-chain dehydrogenases of various substrate specificities, at 2,512,503 to 2,513,291 _2357 Psest_2358: Psest_2358 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,513,291 to 2,514,049 _2358 Psest_2359: Psest_2359 - Predicted permeases, at 2,514,046 to 2,514,930 _2359 Psest_2360: Psest_2360 - Uncharacterized protein, putative amidase, at 2,514,927 to 2,515,688 _2360 Psest_2361: Psest_2361 - Amidases related to nicotinamidase, at 2,515,685 to 2,516,341 _2361 Position (kb) 2514 2515Strain fitness (log2 ratio) -1 0 1 2 3at 2513.751 kb on - strand, within Psest_2358at 2513.751 kb on - strand, within Psest_2358at 2513.751 kb on - strand, within Psest_2358at 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.996 kb on + strandat 2513.997 kb on - strandat 2514.169 kb on + strand, within Psest_2359at 2514.169 kb on + strand, within Psest_2359at 2514.170 kb on - strand, within Psest_2359at 2514.337 kb on + strand, within Psest_2359at 2514.337 kb on + strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2514.338 kb on - strand, within Psest_2359at 2515.278 kb on + strand, within Psest_2360at 2515.548 kb on + strand, within Psest_2360at 2515.548 kb on + strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.549 kb on - strand, within Psest_2360at 2515.834 kb on - strand, within Psest_2361

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3
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2,513,751 - Psest_2358 0.61 +0.5
2,513,751 - Psest_2358 0.61 +0.3
2,513,751 - Psest_2358 0.61 -1.1
2,513,996 + +0.2
2,513,996 + -0.3
2,513,996 + -1.1
2,513,996 + -0.6
2,513,997 - +1.4
2,514,169 + Psest_2359 0.14 +0.2
2,514,169 + Psest_2359 0.14 +1.7
2,514,170 - Psest_2359 0.14 +1.1
2,514,337 + Psest_2359 0.33 +0.8
2,514,337 + Psest_2359 0.33 +3.7
2,514,338 - Psest_2359 0.33 +2.2
2,514,338 - Psest_2359 0.33 +0.5
2,514,338 - Psest_2359 0.33 +2.0
2,515,278 + Psest_2360 0.46 +1.2
2,515,548 + Psest_2360 0.81 +0.2
2,515,548 + Psest_2360 0.81 -0.0
2,515,549 - Psest_2360 0.82 -1.3
2,515,549 - Psest_2360 0.82 -0.4
2,515,549 - Psest_2360 0.82 +0.6
2,515,549 - Psest_2360 0.82 -1.1
2,515,549 - Psest_2360 0.82 -1.2
2,515,549 - Psest_2360 0.82 -0.9
2,515,549 - Psest_2360 0.82 +1.6
2,515,549 - Psest_2360 0.82 -1.5
2,515,549 - Psest_2360 0.82 -1.3
2,515,834 - Psest_2361 0.23 -0.4

Or see this region's nucleotide sequence