Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2165

Experiment: Lactate-nitrate; anaerobic; copper stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2163 and Psest_2164 are separated by 102 nucleotidesPsest_2164 and Psest_2165 are separated by 27 nucleotidesPsest_2165 and Psest_2166 are separated by 16 nucleotides Psest_2163: Psest_2163 - Transcriptional regulator, at 2,315,713 to 2,316,633 _2163 Psest_2164: Psest_2164 - Uncharacterized conserved protein, at 2,316,736 to 2,317,560 _2164 Psest_2165: Psest_2165 - Cytochrome B561, at 2,317,588 to 2,318,427 _2165 Psest_2166: Psest_2166 - Membrane proteins related to metalloendopeptidases, at 2,318,444 to 2,319,292 _2166 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2316.711 kb on + strandat 2316.712 kb on - strandat 2316.973 kb on + strand, within Psest_2164at 2316.973 kb on + strand, within Psest_2164at 2316.973 kb on + strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.974 kb on - strand, within Psest_2164at 2316.999 kb on + strand, within Psest_2164at 2316.999 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.003 kb on + strand, within Psest_2164at 2317.004 kb on - strand, within Psest_2164at 2317.004 kb on - strand, within Psest_2164at 2317.004 kb on - strand, within Psest_2164at 2317.591 kb on + strandat 2317.591 kb on + strandat 2317.889 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.185 kb on + strand, within Psest_2165at 2318.186 kb on - strand, within Psest_2165at 2318.225 kb on - strand, within Psest_2165at 2318.273 kb on + strand, within Psest_2165at 2318.567 kb on - strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.697 kb on + strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.698 kb on - strand, within Psest_2166at 2318.863 kb on + strand, within Psest_2166at 2318.863 kb on + strand, within Psest_2166at 2318.864 kb on - strand, within Psest_2166at 2318.895 kb on + strand, within Psest_2166at 2318.941 kb on - strand, within Psest_2166at 2318.952 kb on + strand, within Psest_2166at 2318.952 kb on + strand, within Psest_2166at 2318.953 kb on - strand, within Psest_2166at 2319.211 kb on + strandat 2319.267 kb on + strandat 2319.271 kb on + strandat 2319.272 kb on - strandat 2319.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3
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2,316,711 + -0.2
2,316,712 - -0.1
2,316,973 + Psest_2164 0.29 +0.3
2,316,973 + Psest_2164 0.29 +0.8
2,316,973 + Psest_2164 0.29 -2.3
2,316,974 - Psest_2164 0.29 -0.9
2,316,974 - Psest_2164 0.29 -0.2
2,316,974 - Psest_2164 0.29 +0.8
2,316,974 - Psest_2164 0.29 -0.9
2,316,974 - Psest_2164 0.29 -1.6
2,316,999 + Psest_2164 0.32 -0.0
2,316,999 + Psest_2164 0.32 -0.0
2,317,003 + Psest_2164 0.32 +0.3
2,317,003 + Psest_2164 0.32 -1.1
2,317,003 + Psest_2164 0.32 -0.7
2,317,003 + Psest_2164 0.32 -0.4
2,317,003 + Psest_2164 0.32 -1.0
2,317,003 + Psest_2164 0.32 +0.3
2,317,003 + Psest_2164 0.32 +0.6
2,317,003 + Psest_2164 0.32 -0.7
2,317,003 + Psest_2164 0.32 +0.9
2,317,004 - Psest_2164 0.32 +0.3
2,317,004 - Psest_2164 0.32 -0.1
2,317,004 - Psest_2164 0.32 +5.0
2,317,591 + +0.0
2,317,591 + +0.0
2,317,889 + Psest_2165 0.36 +1.1
2,318,185 + Psest_2165 0.71 +0.7
2,318,185 + Psest_2165 0.71 +2.1
2,318,185 + Psest_2165 0.71 +0.1
2,318,185 + Psest_2165 0.71 +3.2
2,318,185 + Psest_2165 0.71 -1.0
2,318,186 - Psest_2165 0.71 +0.4
2,318,225 - Psest_2165 0.76 +0.3
2,318,273 + Psest_2165 0.82 +0.5
2,318,567 - Psest_2166 0.14 -0.7
2,318,697 + Psest_2166 0.30 +0.5
2,318,697 + Psest_2166 0.30 -0.7
2,318,697 + Psest_2166 0.30 +0.3
2,318,697 + Psest_2166 0.30 +1.0
2,318,697 + Psest_2166 0.30 +0.8
2,318,698 - Psest_2166 0.30 +1.1
2,318,698 - Psest_2166 0.30 +0.9
2,318,698 - Psest_2166 0.30 -1.0
2,318,698 - Psest_2166 0.30 -2.9
2,318,863 + Psest_2166 0.49 -0.8
2,318,863 + Psest_2166 0.49 +0.5
2,318,864 - Psest_2166 0.49 +0.4
2,318,895 + Psest_2166 0.53 -0.9
2,318,941 - Psest_2166 0.59 -2.5
2,318,952 + Psest_2166 0.60 -1.3
2,318,952 + Psest_2166 0.60 +0.3
2,318,953 - Psest_2166 0.60 +0.7
2,319,211 + +0.4
2,319,267 + +0.1
2,319,271 + -0.2
2,319,272 - -0.2
2,319,272 - +0.4

Or see this region's nucleotide sequence