Experiment: Lactate-nitrate; anaerobic; copper stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2163 and Psest_2164 are separated by 102 nucleotides Psest_2164 and Psest_2165 are separated by 27 nucleotides Psest_2165 and Psest_2166 are separated by 16 nucleotides
Psest_2163: Psest_2163 - Transcriptional regulator, at 2,315,713 to 2,316,633
_2163
Psest_2164: Psest_2164 - Uncharacterized conserved protein, at 2,316,736 to 2,317,560
_2164
Psest_2165: Psest_2165 - Cytochrome B561, at 2,317,588 to 2,318,427
_2165
Psest_2166: Psest_2166 - Membrane proteins related to metalloendopeptidases, at 2,318,444 to 2,319,292
_2166
Position (kb)
2317
2318
2319 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2316.711 kb on + strand at 2316.712 kb on - strand at 2316.973 kb on + strand, within Psest_2164 at 2316.973 kb on + strand, within Psest_2164 at 2316.973 kb on + strand, within Psest_2164 at 2316.974 kb on - strand, within Psest_2164 at 2316.974 kb on - strand, within Psest_2164 at 2316.974 kb on - strand, within Psest_2164 at 2316.974 kb on - strand, within Psest_2164 at 2316.974 kb on - strand, within Psest_2164 at 2316.999 kb on + strand, within Psest_2164 at 2316.999 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.003 kb on + strand, within Psest_2164 at 2317.004 kb on - strand, within Psest_2164 at 2317.004 kb on - strand, within Psest_2164 at 2317.004 kb on - strand, within Psest_2164 at 2317.591 kb on + strand at 2317.591 kb on + strand at 2317.889 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.186 kb on - strand, within Psest_2165 at 2318.225 kb on - strand, within Psest_2165 at 2318.273 kb on + strand, within Psest_2165 at 2318.567 kb on - strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.863 kb on + strand, within Psest_2166 at 2318.863 kb on + strand, within Psest_2166 at 2318.864 kb on - strand, within Psest_2166 at 2318.895 kb on + strand, within Psest_2166 at 2318.941 kb on - strand, within Psest_2166 at 2318.952 kb on + strand, within Psest_2166 at 2318.952 kb on + strand, within Psest_2166 at 2318.953 kb on - strand, within Psest_2166 at 2319.211 kb on + strand at 2319.267 kb on + strand at 2319.271 kb on + strand at 2319.272 kb on - strand at 2319.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3 remove 2,316,711 + -0.2 2,316,712 - -0.1 2,316,973 + Psest_2164 0.29 +0.3 2,316,973 + Psest_2164 0.29 +0.8 2,316,973 + Psest_2164 0.29 -2.3 2,316,974 - Psest_2164 0.29 -0.9 2,316,974 - Psest_2164 0.29 -0.2 2,316,974 - Psest_2164 0.29 +0.8 2,316,974 - Psest_2164 0.29 -0.9 2,316,974 - Psest_2164 0.29 -1.6 2,316,999 + Psest_2164 0.32 -0.0 2,316,999 + Psest_2164 0.32 -0.0 2,317,003 + Psest_2164 0.32 +0.3 2,317,003 + Psest_2164 0.32 -1.1 2,317,003 + Psest_2164 0.32 -0.7 2,317,003 + Psest_2164 0.32 -0.4 2,317,003 + Psest_2164 0.32 -1.0 2,317,003 + Psest_2164 0.32 +0.3 2,317,003 + Psest_2164 0.32 +0.6 2,317,003 + Psest_2164 0.32 -0.7 2,317,003 + Psest_2164 0.32 +0.9 2,317,004 - Psest_2164 0.32 +0.3 2,317,004 - Psest_2164 0.32 -0.1 2,317,004 - Psest_2164 0.32 +5.0 2,317,591 + +0.0 2,317,591 + +0.0 2,317,889 + Psest_2165 0.36 +1.1 2,318,185 + Psest_2165 0.71 +0.7 2,318,185 + Psest_2165 0.71 +2.1 2,318,185 + Psest_2165 0.71 +0.1 2,318,185 + Psest_2165 0.71 +3.2 2,318,185 + Psest_2165 0.71 -1.0 2,318,186 - Psest_2165 0.71 +0.4 2,318,225 - Psest_2165 0.76 +0.3 2,318,273 + Psest_2165 0.82 +0.5 2,318,567 - Psest_2166 0.14 -0.7 2,318,697 + Psest_2166 0.30 +0.5 2,318,697 + Psest_2166 0.30 -0.7 2,318,697 + Psest_2166 0.30 +0.3 2,318,697 + Psest_2166 0.30 +1.0 2,318,697 + Psest_2166 0.30 +0.8 2,318,698 - Psest_2166 0.30 +1.1 2,318,698 - Psest_2166 0.30 +0.9 2,318,698 - Psest_2166 0.30 -1.0 2,318,698 - Psest_2166 0.30 -2.9 2,318,863 + Psest_2166 0.49 -0.8 2,318,863 + Psest_2166 0.49 +0.5 2,318,864 - Psest_2166 0.49 +0.4 2,318,895 + Psest_2166 0.53 -0.9 2,318,941 - Psest_2166 0.59 -2.5 2,318,952 + Psest_2166 0.60 -1.3 2,318,952 + Psest_2166 0.60 +0.3 2,318,953 - Psest_2166 0.60 +0.7 2,319,211 + +0.4 2,319,267 + +0.1 2,319,271 + -0.2 2,319,272 - -0.2 2,319,272 - +0.4
Or see this region's nucleotide sequence