Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0196

Experiment: Lactate-nitrate; anaerobic; copper stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0194 and Psest_0195 are separated by 110 nucleotidesPsest_0195 and Psest_0196 are separated by 390 nucleotidesPsest_0196 and Psest_0197 are separated by 131 nucleotides Psest_0194: Psest_0194 - hypothetical protein, at 190,520 to 190,756 _0194 Psest_0195: Psest_0195 - Small integral membrane protein, at 190,867 to 191,037 _0195 Psest_0196: Psest_0196 - Uncharacterized membrane protein, required for spore maturation in B.subtilis., at 191,428 to 192,657 _0196 Psest_0197: Psest_0197 - TRAP transporter, 4TM/12TM fusion protein, at 192,789 to 195,341 _0197 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 190.474 kb on - strandat 190.505 kb on + strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.506 kb on - strandat 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.661 kb on + strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.662 kb on - strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.675 kb on + strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strandat 190.676 kb on - strand, within Psest_0194at 190.676 kb on - strand, within Psest_0194at 190.881 kb on + strandat 190.881 kb on + strandat 190.881 kb on + strandat 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.884 kb on + strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.885 kb on - strand, within Psest_0195at 190.974 kb on - strand, within Psest_0195at 190.974 kb on - strand, within Psest_0195at 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.089 kb on + strandat 191.090 kb on - strandat 191.090 kb on - strandat 191.090 kb on - strandat 191.222 kb on + strandat 191.222 kb on + strandat 191.222 kb on + strandat 191.324 kb on - strandat 191.358 kb on - strandat 191.528 kb on + strandat 191.528 kb on + strandat 191.528 kb on + strandat 191.528 kb on + strandat 191.529 kb on - strandat 191.529 kb on - strandat 191.529 kb on - strandat 191.865 kb on + strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.906 kb on - strand, within Psest_0196at 192.047 kb on - strand, within Psest_0196at 192.047 kb on - strand, within Psest_0196at 192.047 kb on - strand, within Psest_0196at 192.206 kb on + strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.268 kb on + strand, within Psest_0196at 192.372 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.544 kb on + strandat 192.544 kb on + strandat 192.544 kb on + strandat 192.545 kb on - strandat 192.712 kb on - strandat 192.712 kb on - strandat 192.985 kb on + strandat 192.985 kb on + strandat 192.985 kb on + strandat 192.985 kb on + strandat 193.246 kb on + strand, within Psest_0197at 193.270 kb on + strand, within Psest_0197at 193.270 kb on + strand, within Psest_0197at 193.271 kb on - strand, within Psest_0197at 193.271 kb on - strand, within Psest_0197at 193.271 kb on - strand, within Psest_0197at 193.414 kb on + strand, within Psest_0197at 193.417 kb on + strand, within Psest_0197at 193.418 kb on - strand, within Psest_0197at 193.418 kb on - strand, within Psest_0197at 193.418 kb on - strand, within Psest_0197at 193.522 kb on + strand, within Psest_0197at 193.522 kb on + strand, within Psest_0197at 193.522 kb on + strand, within Psest_0197at 193.523 kb on - strand, within Psest_0197at 193.523 kb on - strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample3
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190,474 - -1.4
190,505 + -2.3
190,506 - -0.2
190,506 - -1.3
190,506 - -1.7
190,506 - -0.4
190,506 - +1.3
190,506 - +0.4
190,506 - -2.1
190,661 + Psest_0194 0.59 +0.8
190,661 + Psest_0194 0.59 -0.7
190,661 + Psest_0194 0.59 +1.2
190,661 + Psest_0194 0.59 +0.6
190,661 + Psest_0194 0.59 +0.3
190,661 + Psest_0194 0.59 +0.2
190,661 + Psest_0194 0.59 +1.0
190,661 + Psest_0194 0.59 +0.1
190,661 + Psest_0194 0.59 +0.3
190,661 + Psest_0194 0.59 +0.2
190,661 + Psest_0194 0.59 +0.7
190,661 + Psest_0194 0.59 +0.2
190,662 - Psest_0194 0.60 +0.1
190,662 - Psest_0194 0.60 +2.8
190,662 - Psest_0194 0.60 -1.3
190,662 - Psest_0194 0.60 +2.6
190,662 - Psest_0194 0.60 -0.1
190,662 - Psest_0194 0.60 -0.8
190,662 - Psest_0194 0.60 -0.3
190,662 - Psest_0194 0.60 -3.5
190,662 - Psest_0194 0.60 -1.1
190,675 + Psest_0194 0.65 +0.5
190,675 + Psest_0194 0.65 +1.4
190,675 + Psest_0194 0.65 -0.8
190,675 + Psest_0194 0.65 +0.2
190,675 + Psest_0194 0.65 +0.3
190,675 + Psest_0194 0.65 -0.4
190,676 - Psest_0194 0.66 -2.2
190,676 - Psest_0194 0.66 +1.5
190,676 - Psest_0194 0.66 +0.3
190,676 - +0.9
190,676 - Psest_0194 0.66 +0.5
190,676 - Psest_0194 0.66 -0.5
190,881 + +1.3
190,881 + +1.1
190,881 + +0.3
190,884 + Psest_0195 0.10 +1.8
190,884 + Psest_0195 0.10 +0.9
190,884 + Psest_0195 0.10 +0.7
190,884 + Psest_0195 0.10 +0.9
190,884 + Psest_0195 0.10 +0.7
190,884 + Psest_0195 0.10 +3.9
190,884 + Psest_0195 0.10 -2.7
190,884 + Psest_0195 0.10 +0.3
190,884 + Psest_0195 0.10 +0.2
190,884 + Psest_0195 0.10 +0.5
190,884 + Psest_0195 0.10 +0.1
190,884 + Psest_0195 0.10 +0.0
190,884 + Psest_0195 0.10 -0.4
190,884 + Psest_0195 0.10 -0.0
190,884 + Psest_0195 0.10 -0.6
190,884 + Psest_0195 0.10 +0.8
190,885 - Psest_0195 0.11 -1.1
190,885 - Psest_0195 0.11 +0.8
190,885 - Psest_0195 0.11 -1.9
190,885 - Psest_0195 0.11 +0.1
190,885 - Psest_0195 0.11 -1.1
190,885 - Psest_0195 0.11 -0.0
190,885 - Psest_0195 0.11 -0.0
190,885 - Psest_0195 0.11 +1.3
190,885 - Psest_0195 0.11 -0.3
190,885 - Psest_0195 0.11 +0.7
190,974 - Psest_0195 0.63 -1.7
190,974 - Psest_0195 0.63 +1.0
191,089 + +0.3
191,089 + +0.0
191,089 + +1.8
191,089 + +0.6
191,089 + -0.2
191,090 - -1.1
191,090 - +0.3
191,090 - +1.3
191,222 + +1.6
191,222 + -0.7
191,222 + -0.7
191,324 - +0.8
191,358 - +0.0
191,528 + +2.2
191,528 + -0.1
191,528 + -1.1
191,528 + +0.0
191,529 - -0.0
191,529 - +0.0
191,529 - +0.2
191,865 + Psest_0196 0.36 -0.5
191,866 - Psest_0196 0.36 +0.2
191,866 - Psest_0196 0.36 +0.3
191,866 - Psest_0196 0.36 +0.3
191,866 - Psest_0196 0.36 +0.9
191,905 + Psest_0196 0.39 +0.2
191,905 + Psest_0196 0.39 +0.4
191,905 + Psest_0196 0.39 +0.5
191,905 + Psest_0196 0.39 +0.2
191,905 + Psest_0196 0.39 +0.5
191,906 - Psest_0196 0.39 -0.6
192,047 - Psest_0196 0.50 -0.9
192,047 - Psest_0196 0.50 +2.2
192,047 - Psest_0196 0.50 -0.8
192,206 + Psest_0196 0.63 +0.8
192,207 - Psest_0196 0.63 +1.0
192,207 - Psest_0196 0.63 -1.5
192,207 - Psest_0196 0.63 -0.2
192,207 - Psest_0196 0.63 +0.5
192,207 - Psest_0196 0.63 -0.6
192,208 + Psest_0196 0.63 +1.3
192,208 + Psest_0196 0.63 -2.0
192,208 + Psest_0196 0.63 +0.9
192,208 + Psest_0196 0.63 -1.3
192,208 + Psest_0196 0.63 +0.3
192,208 + Psest_0196 0.63 +0.1
192,208 + Psest_0196 0.63 -0.2
192,208 + Psest_0196 0.63 +0.7
192,209 - Psest_0196 0.63 +0.2
192,209 - Psest_0196 0.63 +1.5
192,209 - Psest_0196 0.63 +0.9
192,209 - Psest_0196 0.63 -0.5
192,209 - Psest_0196 0.63 +1.1
192,268 + Psest_0196 0.68 +1.4
192,372 + Psest_0196 0.77 +1.0
192,529 + Psest_0196 0.90 +1.1
192,529 + Psest_0196 0.90 +0.6
192,529 + Psest_0196 0.90 +0.5
192,529 + Psest_0196 0.90 -1.3
192,529 + Psest_0196 0.90 +0.7
192,529 + Psest_0196 0.90 -0.2
192,529 + Psest_0196 0.90 -0.8
192,529 + Psest_0196 0.90 +1.0
192,529 + Psest_0196 0.90 +0.4
192,529 + Psest_0196 0.90 +0.8
192,529 + Psest_0196 0.90 +0.6
192,529 + Psest_0196 0.90 +0.4
192,529 + Psest_0196 0.90 -0.3
192,529 + Psest_0196 0.90 +1.7
192,529 + Psest_0196 0.90 +0.2
192,529 + Psest_0196 0.90 +1.9
192,530 - Psest_0196 0.90 -0.0
192,530 - Psest_0196 0.90 -1.1
192,530 - Psest_0196 0.90 +1.9
192,530 - Psest_0196 0.90 -1.3
192,530 - Psest_0196 0.90 +0.5
192,530 - Psest_0196 0.90 -0.0
192,530 - Psest_0196 0.90 -0.4
192,530 - Psest_0196 0.90 +0.6
192,530 - Psest_0196 0.90 +1.8
192,530 - Psest_0196 0.90 -0.9
192,530 - Psest_0196 0.90 +1.0
192,530 - Psest_0196 0.90 +0.4
192,530 - Psest_0196 0.90 +1.3
192,530 - Psest_0196 0.90 -1.0
192,530 - Psest_0196 0.90 -1.3
192,530 - Psest_0196 0.90 -0.8
192,530 - Psest_0196 0.90 -0.3
192,544 + +1.0
192,544 + -1.7
192,544 + -0.3
192,545 - +0.9
192,712 - +2.7
192,712 - +0.8
192,985 + +0.3
192,985 + -0.7
192,985 + -1.3
192,985 + -1.0
193,246 + Psest_0197 0.18 -2.7
193,270 + Psest_0197 0.19 -0.5
193,270 + Psest_0197 0.19 -0.2
193,271 - Psest_0197 0.19 +2.7
193,271 - Psest_0197 0.19 +0.3
193,271 - Psest_0197 0.19 +0.5
193,414 + Psest_0197 0.24 +0.5
193,417 + Psest_0197 0.25 -1.4
193,418 - Psest_0197 0.25 +0.6
193,418 - Psest_0197 0.25 -0.2
193,418 - Psest_0197 0.25 -0.1
193,522 + Psest_0197 0.29 +0.4
193,522 + Psest_0197 0.29 +0.6
193,522 + Psest_0197 0.29 -0.3
193,523 - Psest_0197 0.29 -0.4
193,523 - Psest_0197 0.29 +0.4
193,621 + Psest_0197 0.33 +0.7
193,621 + Psest_0197 0.33 +0.0
193,621 + Psest_0197 0.33 +0.9
193,621 + Psest_0197 0.33 +1.3
193,621 + Psest_0197 0.33 +1.4
193,621 + Psest_0197 0.33 +0.3
193,621 + Psest_0197 0.33 -0.9
193,621 + Psest_0197 0.33 +2.6
193,621 + Psest_0197 0.33 -1.4
193,621 + Psest_0197 0.33 -0.1
193,621 + Psest_0197 0.33 +1.8
193,622 - Psest_0197 0.33 +0.3
193,622 - Psest_0197 0.33 -0.7
193,622 - Psest_0197 0.33 +0.7
193,622 - Psest_0197 0.33 +2.0
193,622 - Psest_0197 0.33 +0.0
193,622 - Psest_0197 0.33 -1.0
193,622 - Psest_0197 0.33 +1.3
193,622 - Psest_0197 0.33 -0.2
193,622 - Psest_0197 0.33 +1.4
193,622 - Psest_0197 0.33 +0.2

Or see this region's nucleotide sequence