Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0637

Experiment: Lactate-nitrate; anaerobic; copper stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0635 and Psest_0636 are separated by 2 nucleotidesPsest_0636 and Psest_0637 are separated by 83 nucleotidesPsest_0637 and Psest_0638 are separated by 10 nucleotidesPsest_0638 and Psest_0639 are separated by 76 nucleotides Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637 _0635 Psest_0636: Psest_0636 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 691,640 to 692,455 _0636 Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369 _0637 Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808 _0638 Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565 _0639 Position (kb) 692 693 694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 691.636 kb on - strandat 691.845 kb on + strand, within Psest_0636at 691.846 kb on - strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.957 kb on - strand, within Psest_0636at 691.957 kb on - strand, within Psest_0636at 692.024 kb on - strand, within Psest_0636at 692.037 kb on + strand, within Psest_0636at 692.038 kb on - strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.066 kb on - strand, within Psest_0636at 692.066 kb on - strand, within Psest_0636at 692.083 kb on + strand, within Psest_0636at 692.084 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.286 kb on + strand, within Psest_0636at 692.286 kb on + strand, within Psest_0636at 692.370 kb on + strand, within Psest_0636at 692.483 kb on + strandat 692.485 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.552 kb on + strandat 692.552 kb on + strandat 692.552 kb on + strandat 692.553 kb on - strandat 692.553 kb on - strandat 692.553 kb on - strandat 692.567 kb on + strandat 692.568 kb on - strandat 692.909 kb on - strandat 692.995 kb on + strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 693.022 kb on + strand, within Psest_0637at 693.092 kb on + strand, within Psest_0637at 693.092 kb on + strand, within Psest_0637at 693.093 kb on - strand, within Psest_0637at 693.119 kb on - strand, within Psest_0637at 693.121 kb on - strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.391 kb on + strandat 693.418 kb on + strandat 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.477 kb on + strand, within Psest_0638at 693.477 kb on + strand, within Psest_0638at 693.478 kb on - strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.841 kb on + strandat 693.841 kb on + strandat 694.095 kb on + strand, within Psest_0639at 694.096 kb on - strand, within Psest_0639at 694.177 kb on + strand, within Psest_0639at 694.178 kb on - strand, within Psest_0639at 694.309 kb on + strand, within Psest_0639at 694.309 kb on + strand, within Psest_0639at 694.310 kb on - strand, within Psest_0639

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample2
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691,636 - -0.5
691,845 + Psest_0636 0.25 +0.3
691,846 - Psest_0636 0.25 +0.9
691,956 + Psest_0636 0.39 +0.5
691,956 + Psest_0636 0.39 -0.6
691,956 + Psest_0636 0.39 +0.9
691,957 - Psest_0636 0.39 -0.0
691,957 - Psest_0636 0.39 +0.4
692,024 - Psest_0636 0.47 -0.3
692,037 + Psest_0636 0.49 -1.3
692,038 - Psest_0636 0.49 +0.4
692,065 + Psest_0636 0.52 +1.2
692,065 + Psest_0636 0.52 +1.0
692,065 + Psest_0636 0.52 +2.3
692,065 + Psest_0636 0.52 -0.4
692,066 - Psest_0636 0.52 +0.5
692,066 - Psest_0636 0.52 +0.5
692,083 + Psest_0636 0.54 +0.5
692,084 - Psest_0636 0.54 -2.3
692,155 - Psest_0636 0.63 -3.1
692,155 - Psest_0636 0.63 -1.0
692,155 - Psest_0636 0.63 +0.9
692,265 + Psest_0636 0.77 -0.9
692,265 + Psest_0636 0.77 -1.6
692,265 + Psest_0636 0.77 -0.3
692,265 + Psest_0636 0.77 -2.7
692,266 - Psest_0636 0.77 +0.2
692,266 - Psest_0636 0.77 +0.3
692,266 - Psest_0636 0.77 -2.7
692,266 - Psest_0636 0.77 +0.0
692,286 + Psest_0636 0.79 +0.6
692,286 + Psest_0636 0.79 +0.4
692,370 + Psest_0636 0.89 -1.2
692,483 + -0.8
692,485 + +1.4
692,493 + +0.1
692,493 + -0.5
692,493 + -1.5
692,493 + +1.5
692,493 + +0.3
692,493 + +0.8
692,493 + +1.7
692,493 + +0.2
692,493 + +1.0
692,493 + -0.7
692,493 + +0.8
692,493 + +0.5
692,493 + -0.8
692,493 + -0.5
692,493 + +0.3
692,493 + -0.9
692,493 + -0.6
692,493 + -0.5
692,493 + +0.5
692,493 + -2.0
692,493 + +0.5
692,494 - +0.9
692,494 - -0.9
692,494 - -0.5
692,494 - -0.3
692,494 - +0.0
692,494 - +0.7
692,552 + +0.7
692,552 + +0.5
692,552 + +1.4
692,553 - -0.5
692,553 - -1.4
692,553 - -0.1
692,567 + +1.3
692,568 - +0.2
692,909 - -2.3
692,995 + Psest_0637 0.55 -0.5
692,996 - Psest_0637 0.55 -1.3
692,996 - Psest_0637 0.55 -0.3
692,996 - Psest_0637 0.55 -2.3
692,996 - Psest_0637 0.55 -0.8
693,022 + Psest_0637 0.58 -2.5
693,092 + Psest_0637 0.67 -0.6
693,092 + Psest_0637 0.67 -0.5
693,093 - Psest_0637 0.67 +0.5
693,119 - Psest_0637 0.70 -1.6
693,121 - Psest_0637 0.70 +0.9
693,232 + Psest_0637 0.83 -0.4
693,232 + Psest_0637 0.83 -0.5
693,232 + Psest_0637 0.83 +0.3
693,233 - Psest_0637 0.84 +3.3
693,233 - Psest_0637 0.84 -1.3
693,233 - Psest_0637 0.84 +0.6
693,233 - Psest_0637 0.84 -0.7
693,233 - Psest_0637 0.84 +0.1
693,233 - Psest_0637 0.84 -0.9
693,233 - Psest_0637 0.84 -0.0
693,391 + +0.5
693,418 + +0.4
693,474 + Psest_0638 0.22 -0.7
693,474 + Psest_0638 0.22 +1.0
693,474 + Psest_0638 0.22 +0.1
693,474 + Psest_0638 0.22 -1.0
693,474 + Psest_0638 0.22 -0.2
693,474 + Psest_0638 0.22 +0.1
693,475 - Psest_0638 0.22 +1.7
693,475 - Psest_0638 0.22 +0.4
693,475 - Psest_0638 0.22 -0.4
693,475 - Psest_0638 0.22 +0.4
693,477 + Psest_0638 0.23 +0.4
693,477 + Psest_0638 0.23 -0.3
693,478 - Psest_0638 0.23 +0.3
693,732 + Psest_0638 0.82 +1.1
693,732 + Psest_0638 0.82 +0.0
693,732 + Psest_0638 0.82 -0.8
693,732 + Psest_0638 0.82 +1.1
693,733 - Psest_0638 0.82 +0.4
693,733 - Psest_0638 0.82 +1.7
693,733 - Psest_0638 0.82 -0.4
693,733 - Psest_0638 0.82 -0.8
693,733 - Psest_0638 0.82 +0.3
693,841 + -0.4
693,841 + +1.5
694,095 + Psest_0639 0.31 +0.8
694,096 - Psest_0639 0.31 -0.9
694,177 + Psest_0639 0.43 +0.6
694,178 - Psest_0639 0.43 -0.5
694,309 + Psest_0639 0.62 +0.9
694,309 + Psest_0639 0.62 -0.1
694,310 - Psest_0639 0.62 +0.6

Or see this region's nucleotide sequence