Experiment: Lactate-nitrate; anaerobic; copper stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0578 and Psest_0581 are separated by 636 nucleotides Psest_0581 and Psest_0582 are separated by 424 nucleotides Psest_0582 and Psest_0583 are separated by 317 nucleotides
Psest_0578: Psest_0578 - hypothetical protein, at 630,773 to 631,219
_0578
Psest_0581: Psest_0581 - heavy metal response regulator, at 631,856 to 632,536
_0581
Psest_0582: Psest_0582 - hypothetical protein, at 632,961 to 633,170
_0582
Psest_0583: Psest_0583 - copper-resistance protein, CopA family, at 633,488 to 635,329
_0583
Position (kb) 631
632
633 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.858 kb on + strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.859 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.882 kb on - strand, within Psest_0578 at 630.930 kb on + strand, within Psest_0578 at 630.966 kb on + strand, within Psest_0578 at 630.967 kb on - strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.024 kb on + strand, within Psest_0578 at 631.025 kb on - strand, within Psest_0578 at 631.137 kb on - strand, within Psest_0578 at 631.137 kb on - strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.174 kb on + strand, within Psest_0578 at 631.175 kb on - strand at 631.175 kb on - strand at 631.175 kb on - strand at 631.178 kb on - strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.203 kb on + strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.204 kb on - strand at 631.244 kb on + strand at 631.353 kb on + strand at 631.353 kb on + strand at 631.354 kb on - strand at 631.354 kb on - strand at 631.354 kb on - strand at 631.416 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.527 kb on - strand at 631.534 kb on - strand at 631.534 kb on - strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.577 kb on + strand at 631.687 kb on + strand at 631.687 kb on + strand at 631.687 kb on + strand at 631.688 kb on - strand at 631.705 kb on + strand at 631.714 kb on - strand at 631.714 kb on - strand at 631.882 kb on - strand at 631.904 kb on + strand at 631.904 kb on + strand at 631.904 kb on + strand at 631.905 kb on - strand at 631.912 kb on + strand at 631.912 kb on + strand at 631.912 kb on + strand at 631.912 kb on + strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 631.913 kb on - strand at 632.001 kb on - strand, within Psest_0581 at 632.001 kb on - strand, within Psest_0581 at 632.051 kb on + strand, within Psest_0581 at 632.052 kb on - strand, within Psest_0581 at 632.052 kb on - strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.054 kb on + strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.055 kb on - strand, within Psest_0581 at 632.084 kb on + strand, within Psest_0581 at 632.084 kb on + strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.085 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.091 kb on - strand, within Psest_0581 at 632.110 kb on + strand, within Psest_0581 at 632.110 kb on + strand, within Psest_0581 at 632.176 kb on + strand, within Psest_0581 at 632.176 kb on + strand, within Psest_0581 at 632.177 kb on - strand, within Psest_0581 at 632.177 kb on - strand, within Psest_0581 at 632.197 kb on + strand, within Psest_0581 at 632.197 kb on + strand, within Psest_0581 at 632.197 kb on + strand, within Psest_0581 at 632.349 kb on - strand, within Psest_0581 at 632.349 kb on - strand, within Psest_0581 at 632.387 kb on + strand, within Psest_0581 at 632.387 kb on + strand, within Psest_0581 at 632.387 kb on + strand, within Psest_0581 at 632.388 kb on - strand, within Psest_0581 at 632.388 kb on - strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.403 kb on + strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.404 kb on - strand, within Psest_0581 at 632.410 kb on + strand, within Psest_0581 at 632.410 kb on + strand, within Psest_0581 at 632.410 kb on + strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.411 kb on - strand, within Psest_0581 at 632.490 kb on - strand at 632.490 kb on - strand at 632.490 kb on - strand at 632.490 kb on - strand at 632.493 kb on + strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.494 kb on - strand at 632.542 kb on + strand at 632.543 kb on - strand at 632.543 kb on - strand at 632.595 kb on - strand at 632.595 kb on - strand at 632.600 kb on - strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.609 kb on + strand at 632.610 kb on - strand at 632.610 kb on - strand at 632.639 kb on + strand at 632.652 kb on + strand at 632.652 kb on + strand at 632.652 kb on + strand at 632.709 kb on + strand at 632.719 kb on + strand at 632.757 kb on + strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.758 kb on - strand at 632.789 kb on + strand at 632.820 kb on + strand at 632.820 kb on + strand at 632.820 kb on + strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.821 kb on - strand at 632.841 kb on + strand at 632.849 kb on - strand at 632.879 kb on - strand at 632.883 kb on + strand at 632.883 kb on + strand at 632.883 kb on + strand at 632.884 kb on - strand at 632.910 kb on - strand at 632.910 kb on - strand at 632.910 kb on - strand at 632.913 kb on + strand at 632.913 kb on + strand at 632.913 kb on + strand at 632.914 kb on - strand at 632.952 kb on + strand at 632.960 kb on - strand at 632.986 kb on + strand, within Psest_0582 at 633.015 kb on + strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.016 kb on - strand, within Psest_0582 at 633.044 kb on + strand, within Psest_0582 at 633.045 kb on - strand, within Psest_0582 at 633.045 kb on - strand, within Psest_0582 at 633.056 kb on + strand, within Psest_0582 at 633.086 kb on + strand, within Psest_0582 at 633.124 kb on + strand, within Psest_0582 at 633.161 kb on + strand at 633.209 kb on - strand at 633.316 kb on - strand at 633.322 kb on - strand at 633.322 kb on - strand at 633.348 kb on + strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.360 kb on - strand at 633.364 kb on - strand at 633.369 kb on + strand at 633.370 kb on - strand at 633.388 kb on - strand at 633.411 kb on + strand at 633.467 kb on + strand at 633.467 kb on + strand at 633.467 kb on + strand at 633.467 kb on + strand at 633.468 kb on - strand at 633.468 kb on - strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.483 kb on + strand at 633.484 kb on - strand at 633.484 kb on - strand at 633.484 kb on - strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.496 kb on + strand at 633.497 kb on - strand at 633.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample2 remove 630,858 + Psest_0578 0.19 +2.2 630,858 + Psest_0578 0.19 +0.4 630,858 + Psest_0578 0.19 -2.0 630,858 + Psest_0578 0.19 -1.4 630,859 - Psest_0578 0.19 -0.6 630,859 - Psest_0578 0.19 +0.2 630,859 - Psest_0578 0.19 +1.6 630,859 - Psest_0578 0.19 +1.2 630,882 - Psest_0578 0.24 +0.4 630,882 - Psest_0578 0.24 +0.4 630,882 - Psest_0578 0.24 +0.6 630,930 + Psest_0578 0.35 -0.4 630,966 + Psest_0578 0.43 +1.1 630,967 - Psest_0578 0.43 -2.1 631,024 + Psest_0578 0.56 -0.4 631,024 + Psest_0578 0.56 +2.1 631,024 + Psest_0578 0.56 -1.0 631,025 - Psest_0578 0.56 -2.9 631,137 - Psest_0578 0.81 -0.7 631,137 - Psest_0578 0.81 -0.1 631,174 + Psest_0578 0.90 -0.1 631,174 + Psest_0578 0.90 +0.7 631,174 + Psest_0578 0.90 +0.2 631,174 + Psest_0578 0.90 +0.2 631,175 - -0.1 631,175 - +0.0 631,175 - -0.0 631,178 - -0.5 631,203 + +1.3 631,203 + +0.5 631,203 + +0.4 631,203 + +0.3 631,203 + -0.4 631,203 + -0.3 631,203 + -0.4 631,203 + +1.2 631,203 + +1.7 631,203 + +0.3 631,203 + +0.6 631,203 + -0.2 631,203 + -0.7 631,203 + +0.3 631,204 - -1.4 631,204 - -1.4 631,204 - -2.2 631,204 - +0.3 631,204 - +0.6 631,204 - -1.2 631,204 - +0.0 631,204 - -0.0 631,204 - +0.9 631,204 - -1.7 631,204 - +0.5 631,204 - -1.0 631,204 - -0.7 631,244 + -0.7 631,353 + +1.6 631,353 + -0.0 631,354 - -0.0 631,354 - -0.5 631,354 - -1.0 631,416 - -0.7 631,527 - -0.2 631,527 - +0.0 631,527 - -1.5 631,527 - +2.1 631,527 - +0.4 631,527 - -1.8 631,534 - -0.6 631,534 - -0.1 631,577 + -1.4 631,577 + +1.0 631,577 + +0.6 631,577 + -0.4 631,687 + +0.9 631,687 + -0.6 631,687 + +2.3 631,688 - +0.2 631,705 + +2.6 631,714 - +0.5 631,714 - -1.2 631,882 - -1.1 631,904 + -1.4 631,904 + -1.8 631,904 + -1.4 631,905 - -1.7 631,912 + -1.4 631,912 + -1.1 631,912 + -1.2 631,912 + -1.4 631,913 - -0.4 631,913 - -2.3 631,913 - -0.7 631,913 - +0.8 631,913 - -1.0 631,913 - -2.3 631,913 - -0.7 631,913 - -1.0 631,913 - +1.0 632,001 - Psest_0581 0.21 -2.4 632,001 - Psest_0581 0.21 +0.4 632,051 + Psest_0581 0.29 -2.3 632,052 - Psest_0581 0.29 -1.0 632,052 - Psest_0581 0.29 -2.7 632,054 + Psest_0581 0.29 -2.2 632,054 + Psest_0581 0.29 -3.5 632,054 + Psest_0581 0.29 -1.0 632,054 + Psest_0581 0.29 -1.7 632,055 - Psest_0581 0.29 +0.5 632,055 - Psest_0581 0.29 +1.6 632,055 - Psest_0581 0.29 -2.2 632,055 - Psest_0581 0.29 -1.0 632,084 + Psest_0581 0.33 -2.5 632,084 + Psest_0581 0.33 -0.7 632,085 - Psest_0581 0.34 -1.6 632,085 - Psest_0581 0.34 -1.7 632,085 - Psest_0581 0.34 -0.7 632,085 - Psest_0581 0.34 +1.2 632,085 - Psest_0581 0.34 -2.1 632,091 - Psest_0581 0.35 +0.3 632,091 - Psest_0581 0.35 +1.7 632,091 - Psest_0581 0.35 +1.2 632,091 - Psest_0581 0.35 -2.3 632,110 + Psest_0581 0.37 -3.2 632,110 + Psest_0581 0.37 -0.6 632,176 + Psest_0581 0.47 -1.9 632,176 + Psest_0581 0.47 -0.0 632,177 - Psest_0581 0.47 -0.5 632,177 - Psest_0581 0.47 -1.0 632,197 + Psest_0581 0.50 -1.1 632,197 + Psest_0581 0.50 -0.4 632,197 + Psest_0581 0.50 +0.6 632,349 - Psest_0581 0.72 -0.8 632,349 - Psest_0581 0.72 -1.2 632,387 + Psest_0581 0.78 -2.4 632,387 + Psest_0581 0.78 -2.0 632,387 + Psest_0581 0.78 -2.7 632,388 - Psest_0581 0.78 -1.5 632,388 - Psest_0581 0.78 +1.3 632,403 + Psest_0581 0.80 +0.4 632,403 + Psest_0581 0.80 -0.9 632,403 + Psest_0581 0.80 +0.1 632,403 + Psest_0581 0.80 -1.7 632,403 + Psest_0581 0.80 -1.6 632,404 - Psest_0581 0.80 +0.1 632,404 - Psest_0581 0.80 +0.6 632,404 - Psest_0581 0.80 -1.5 632,404 - Psest_0581 0.80 +0.4 632,404 - Psest_0581 0.80 -1.7 632,404 - Psest_0581 0.80 -0.9 632,410 + Psest_0581 0.81 -0.2 632,410 + Psest_0581 0.81 -3.0 632,410 + Psest_0581 0.81 -1.0 632,411 - Psest_0581 0.81 -1.9 632,411 - Psest_0581 0.81 -2.1 632,411 - Psest_0581 0.81 -0.7 632,411 - Psest_0581 0.81 -0.7 632,411 - Psest_0581 0.81 -1.2 632,490 - -1.0 632,490 - +1.0 632,490 - -0.7 632,490 - -1.8 632,493 + -1.1 632,494 - +0.4 632,494 - -0.9 632,494 - -0.8 632,494 - -1.2 632,494 - -0.0 632,494 - -3.1 632,494 - +0.9 632,494 - -0.0 632,494 - -0.7 632,542 + -1.5 632,543 - +0.8 632,543 - +0.8 632,595 - +0.9 632,595 - +0.9 632,600 - +3.6 632,609 + -0.1 632,609 + -2.4 632,609 + -0.6 632,609 + -0.3 632,609 + -1.0 632,609 + -1.0 632,610 - +0.9 632,610 - +0.9 632,639 + +0.6 632,652 + -1.2 632,652 + -1.7 632,652 + -1.6 632,709 + -0.5 632,719 + -3.0 632,757 + -0.0 632,758 - +0.9 632,758 - -1.2 632,758 - +1.3 632,758 - -1.1 632,758 - +0.3 632,789 + -2.6 632,820 + -1.4 632,820 + -3.0 632,820 + -2.2 632,821 - -0.3 632,821 - +1.5 632,821 - +1.0 632,821 - +0.7 632,821 - -0.2 632,841 + -1.4 632,849 - +1.7 632,879 - -2.2 632,883 + -1.2 632,883 + -2.6 632,883 + -2.7 632,884 - +3.5 632,910 - +0.6 632,910 - +0.6 632,910 - +1.3 632,913 + +0.6 632,913 + -1.6 632,913 + -1.5 632,914 - -1.3 632,952 + -3.0 632,960 - +0.6 632,986 + Psest_0582 0.12 -0.4 633,015 + Psest_0582 0.26 -2.1 633,016 - Psest_0582 0.26 +0.5 633,016 - Psest_0582 0.26 +0.5 633,016 - Psest_0582 0.26 -0.4 633,016 - Psest_0582 0.26 +0.3 633,044 + Psest_0582 0.40 -3.3 633,045 - Psest_0582 0.40 -1.3 633,045 - Psest_0582 0.40 -0.3 633,056 + Psest_0582 0.45 -2.0 633,086 + Psest_0582 0.60 -2.0 633,124 + Psest_0582 0.78 +0.6 633,161 + -2.9 633,209 - +1.6 633,316 - +2.3 633,322 - -0.8 633,322 - -0.8 633,348 + -2.9 633,359 + -2.9 633,359 + -2.0 633,360 - -1.5 633,364 - -0.7 633,369 + -1.0 633,370 - -0.3 633,388 - +1.4 633,411 + -3.9 633,467 + -2.9 633,467 + -1.0 633,467 + -1.9 633,467 + -0.6 633,468 - +0.9 633,468 - -1.0 633,483 + -2.1 633,483 + -1.5 633,483 + -1.4 633,483 + -2.9 633,483 + -0.4 633,483 + -2.2 633,483 + +1.2 633,484 - -0.7 633,484 - -0.0 633,484 - +0.4 633,496 + -0.1 633,496 + -0.0 633,496 + +4.4 633,496 + -1.0 633,496 + -0.4 633,496 + -1.1 633,497 - -0.0 633,505 + +4.2
Or see this region's nucleotide sequence