Experiment: Lactate-nitrate; anaerobic; copper stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0318 and Psest_0319 are separated by 93 nucleotides Psest_0319 and Psest_0320 are separated by 174 nucleotides
Psest_0318: Psest_0318 - NAD-dependent DNA ligase (contains BRCT domain type II), at 340,356 to 342,020
_0318
Psest_0319: Psest_0319 - Predicted ferric reductase, at 342,114 to 343,445
_0319
Psest_0320: Psest_0320 - ABC-type multidrug transport system, ATPase component, at 343,620 to 344,543
_0320
Position (kb) 342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 341.114 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.598 kb on - strand, within Psest_0318 at 341.598 kb on - strand, within Psest_0318 at 341.884 kb on + strand at 341.885 kb on - strand at 341.885 kb on - strand at 342.122 kb on + strand at 342.122 kb on + strand at 342.122 kb on + strand at 342.123 kb on - strand at 342.297 kb on + strand, within Psest_0319 at 342.376 kb on + strand, within Psest_0319 at 342.377 kb on - strand, within Psest_0319 at 342.424 kb on - strand, within Psest_0319 at 342.569 kb on - strand, within Psest_0319 at 342.720 kb on - strand, within Psest_0319 at 342.897 kb on + strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.925 kb on + strand, within Psest_0319 at 342.925 kb on + strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 343.016 kb on - strand, within Psest_0319 at 343.222 kb on + strand, within Psest_0319 at 343.223 kb on - strand, within Psest_0319 at 343.321 kb on + strand at 343.321 kb on + strand at 343.322 kb on - strand at 343.322 kb on - strand at 343.322 kb on - strand at 343.322 kb on - strand at 343.423 kb on + strand at 343.423 kb on + strand at 343.424 kb on - strand at 343.424 kb on - strand at 343.424 kb on - strand at 343.424 kb on - strand at 343.434 kb on + strand at 343.434 kb on + strand at 343.434 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.579 kb on + strand at 343.580 kb on - strand at 343.583 kb on + strand at 343.659 kb on + strand at 343.659 kb on + strand at 343.660 kb on - strand at 343.660 kb on - strand at 344.196 kb on + strand, within Psest_0320 at 344.196 kb on + strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample2 remove 341,114 - Psest_0318 0.46 +0.3 341,114 - Psest_0318 0.46 -0.5 341,114 - Psest_0318 0.46 -0.9 341,229 + Psest_0318 0.52 +0.5 341,229 + Psest_0318 0.52 -0.5 341,229 + Psest_0318 0.52 -1.8 341,229 + Psest_0318 0.52 -0.4 341,598 - Psest_0318 0.75 -1.5 341,598 - Psest_0318 0.75 -0.1 341,884 + -1.7 341,885 - +1.6 341,885 - -0.1 342,122 + -0.5 342,122 + +1.4 342,122 + +0.7 342,123 - +1.5 342,297 + Psest_0319 0.14 -0.5 342,376 + Psest_0319 0.20 +4.2 342,377 - Psest_0319 0.20 +0.7 342,424 - Psest_0319 0.23 +1.1 342,569 - Psest_0319 0.34 -0.8 342,720 - Psest_0319 0.45 +1.1 342,897 + Psest_0319 0.59 +0.5 342,898 - Psest_0319 0.59 +2.0 342,898 - Psest_0319 0.59 +2.6 342,898 - Psest_0319 0.59 +1.4 342,898 - Psest_0319 0.59 -1.1 342,925 + Psest_0319 0.61 -0.4 342,925 + Psest_0319 0.61 -0.7 342,926 - Psest_0319 0.61 -0.5 342,926 - Psest_0319 0.61 +0.2 342,926 - Psest_0319 0.61 +0.5 343,016 - Psest_0319 0.68 +0.2 343,222 + Psest_0319 0.83 +0.4 343,223 - Psest_0319 0.83 +1.1 343,321 + -0.3 343,321 + +1.6 343,322 - +2.0 343,322 - +0.1 343,322 - -1.5 343,322 - -0.5 343,423 + +0.5 343,423 + +0.0 343,424 - +1.4 343,424 - -0.5 343,424 - +0.8 343,424 - -1.5 343,434 + +0.3 343,434 + +3.5 343,434 + -0.4 343,496 + -0.6 343,496 + +1.3 343,496 + -0.5 343,496 + +2.2 343,496 + +0.4 343,496 + +0.7 343,496 + -0.0 343,496 + +2.3 343,496 + -1.1 343,496 + +0.0 343,496 + +1.2 343,496 + +2.5 343,496 + +1.0 343,496 + -1.0 343,496 + -1.6 343,496 + +1.2 343,496 + -0.5 343,496 + +0.2 343,496 + -0.1 343,496 + +0.6 343,496 + +0.5 343,496 + +1.8 343,496 + +0.5 343,496 + -1.1 343,496 + +0.8 343,496 + +2.3 343,496 + -0.5 343,496 + +0.5 343,496 + -0.8 343,496 + +0.2 343,496 + +2.9 343,496 + +5.0 343,496 + -0.1 343,496 + +0.5 343,496 + -0.8 343,497 - +0.0 343,497 - +0.5 343,497 - -0.5 343,497 - -0.5 343,497 - -1.9 343,497 - -2.7 343,497 - -0.4 343,497 - -0.4 343,497 - -0.1 343,497 - -1.4 343,497 - -0.6 343,497 - +3.0 343,497 - -0.1 343,497 - -0.4 343,497 - +1.0 343,497 - +0.5 343,497 - +0.1 343,497 - -0.7 343,497 - -0.7 343,497 - -0.3 343,497 - -0.0 343,497 - -3.2 343,497 - -0.3 343,497 - -1.5 343,497 - -0.8 343,497 - -1.6 343,497 - -1.3 343,497 - -1.1 343,497 - -0.4 343,497 - +0.5 343,497 - +0.3 343,497 - -1.6 343,579 + +0.5 343,580 - -2.1 343,583 + +2.3 343,659 + +1.5 343,659 + -0.8 343,660 - -0.5 343,660 - +0.5 344,196 + Psest_0320 0.62 -0.8 344,196 + Psest_0320 0.62 -1.2 344,197 - Psest_0320 0.62 -1.8 344,197 - Psest_0320 0.62 -0.7 344,197 - Psest_0320 0.62 -3.1 344,197 - Psest_0320 0.62 +0.9 344,197 - Psest_0320 0.62 -0.4 344,197 - Psest_0320 0.62 +0.9 344,197 - Psest_0320 0.62 -1.1
Or see this region's nucleotide sequence