Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1590

Experiment: Lactate-nitrate; anaerobic; copper stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1588 and Psest_1589 overlap by 11 nucleotidesPsest_1589 and Psest_1590 are separated by 11 nucleotidesPsest_1590 and Psest_1591 are separated by 196 nucleotidesPsest_1591 and Psest_1592 overlap by 4 nucleotides Psest_1588: Psest_1588 - Uncharacterized protein involved in copper resistance, at 1,692,898 to 1,693,878 _1588 Psest_1589: Psest_1589 - hypothetical protein, at 1,693,868 to 1,694,185 _1589 Psest_1590: Psest_1590 - copper-resistance protein, CopA family, at 1,694,197 to 1,695,975 _1590 Psest_1591: Psest_1591 - hypothetical protein, at 1,696,172 to 1,696,828 _1591 Psest_1592: Psest_1592 - hypothetical protein, at 1,696,825 to 1,697,379 _1592 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1693.450 kb on - strand, within Psest_1588at 1694.206 kb on + strandat 1694.207 kb on - strandat 1694.261 kb on + strandat 1694.261 kb on + strandat 1694.261 kb on + strandat 1694.297 kb on + strandat 1694.451 kb on - strand, within Psest_1590at 1694.580 kb on + strand, within Psest_1590at 1694.580 kb on + strand, within Psest_1590at 1694.580 kb on + strand, within Psest_1590at 1694.597 kb on + strand, within Psest_1590at 1694.988 kb on - strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.134 kb on + strand, within Psest_1590at 1695.135 kb on - strand, within Psest_1590at 1695.135 kb on - strand, within Psest_1590at 1695.233 kb on + strand, within Psest_1590at 1695.233 kb on + strand, within Psest_1590at 1695.233 kb on + strand, within Psest_1590at 1695.234 kb on - strand, within Psest_1590at 1695.234 kb on - strand, within Psest_1590at 1695.234 kb on - strand, within Psest_1590at 1695.239 kb on + strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.240 kb on - strand, within Psest_1590at 1695.380 kb on + strand, within Psest_1590at 1695.380 kb on + strand, within Psest_1590at 1695.380 kb on + strand, within Psest_1590at 1695.381 kb on - strand, within Psest_1590at 1695.381 kb on - strand, within Psest_1590at 1695.383 kb on + strand, within Psest_1590at 1695.383 kb on + strand, within Psest_1590at 1695.384 kb on - strand, within Psest_1590at 1695.451 kb on + strand, within Psest_1590at 1695.451 kb on + strand, within Psest_1590at 1695.452 kb on - strand, within Psest_1590at 1695.470 kb on + strand, within Psest_1590at 1695.471 kb on - strand, within Psest_1590at 1695.471 kb on - strand, within Psest_1590at 1695.555 kb on - strand, within Psest_1590at 1695.560 kb on + strand, within Psest_1590at 1695.560 kb on + strand, within Psest_1590at 1695.561 kb on - strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.596 kb on + strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1695.597 kb on - strand, within Psest_1590at 1696.050 kb on + strandat 1696.051 kb on - strandat 1696.097 kb on + strandat 1696.177 kb on + strandat 1696.177 kb on + strandat 1696.178 kb on - strandat 1696.178 kb on - strandat 1696.178 kb on - strandat 1696.178 kb on - strandat 1696.209 kb on + strandat 1696.250 kb on + strand, within Psest_1591at 1696.250 kb on + strand, within Psest_1591at 1696.250 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.545 kb on + strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.546 kb on - strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.547 kb on + strand, within Psest_1591at 1696.548 kb on - strand, within Psest_1591at 1696.548 kb on - strand, within Psest_1591at 1696.815 kb on + strandat 1696.815 kb on + strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.816 kb on - strandat 1696.858 kb on - strandat 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.900 kb on + strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592at 1696.901 kb on - strand, within Psest_1592

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample2
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1,693,450 - Psest_1588 0.56 +0.4
1,694,206 + +0.4
1,694,207 - -1.4
1,694,261 + -0.5
1,694,261 + +0.7
1,694,261 + -0.2
1,694,297 + +1.5
1,694,451 - Psest_1590 0.14 -0.5
1,694,580 + Psest_1590 0.22 -0.0
1,694,580 + Psest_1590 0.22 +0.7
1,694,580 + Psest_1590 0.22 -0.3
1,694,597 + Psest_1590 0.22 -0.3
1,694,988 - Psest_1590 0.44 +0.7
1,695,134 + Psest_1590 0.53 +1.4
1,695,134 + Psest_1590 0.53 +1.4
1,695,134 + Psest_1590 0.53 +1.4
1,695,134 + Psest_1590 0.53 +0.4
1,695,134 + Psest_1590 0.53 -1.1
1,695,134 + Psest_1590 0.53 +0.8
1,695,134 + Psest_1590 0.53 +0.1
1,695,135 - Psest_1590 0.53 -0.5
1,695,135 - Psest_1590 0.53 +1.4
1,695,233 + Psest_1590 0.58 -0.3
1,695,233 + Psest_1590 0.58 +1.5
1,695,233 + Psest_1590 0.58 -0.4
1,695,234 - Psest_1590 0.58 +0.1
1,695,234 - Psest_1590 0.58 +0.7
1,695,234 - Psest_1590 0.58 +0.2
1,695,239 + Psest_1590 0.59 +0.2
1,695,240 - Psest_1590 0.59 +1.0
1,695,240 - Psest_1590 0.59 +0.1
1,695,240 - Psest_1590 0.59 +1.7
1,695,240 - Psest_1590 0.59 +1.0
1,695,380 + Psest_1590 0.66 +1.8
1,695,380 + Psest_1590 0.66 +0.1
1,695,380 + Psest_1590 0.66 +1.1
1,695,381 - Psest_1590 0.67 -1.4
1,695,381 - Psest_1590 0.67 +0.5
1,695,383 + Psest_1590 0.67 -0.2
1,695,383 + Psest_1590 0.67 -0.4
1,695,384 - Psest_1590 0.67 -0.5
1,695,451 + Psest_1590 0.70 -0.6
1,695,451 + Psest_1590 0.70 +0.6
1,695,452 - Psest_1590 0.71 +0.0
1,695,470 + Psest_1590 0.72 -0.2
1,695,471 - Psest_1590 0.72 -0.6
1,695,471 - Psest_1590 0.72 -0.5
1,695,555 - Psest_1590 0.76 +0.9
1,695,560 + Psest_1590 0.77 +0.4
1,695,560 + Psest_1590 0.77 +0.8
1,695,561 - Psest_1590 0.77 +0.3
1,695,596 + Psest_1590 0.79 -0.1
1,695,596 + Psest_1590 0.79 -0.9
1,695,596 + Psest_1590 0.79 +2.4
1,695,596 + Psest_1590 0.79 -1.3
1,695,596 + Psest_1590 0.79 -0.3
1,695,596 + Psest_1590 0.79 +0.5
1,695,596 + Psest_1590 0.79 +0.5
1,695,596 + Psest_1590 0.79 -0.2
1,695,596 + Psest_1590 0.79 -0.6
1,695,596 + Psest_1590 0.79 +0.4
1,695,596 + Psest_1590 0.79 -0.4
1,695,597 - Psest_1590 0.79 +0.7
1,695,597 - Psest_1590 0.79 +1.2
1,695,597 - Psest_1590 0.79 +0.3
1,695,597 - Psest_1590 0.79 -0.4
1,695,597 - Psest_1590 0.79 -0.1
1,695,597 - Psest_1590 0.79 -1.6
1,695,597 - Psest_1590 0.79 +5.7
1,695,597 - Psest_1590 0.79 +0.8
1,695,597 - Psest_1590 0.79 -0.1
1,696,050 + +0.1
1,696,051 - +0.1
1,696,097 + -0.4
1,696,177 + +0.8
1,696,177 + +0.0
1,696,178 - -3.3
1,696,178 - +2.4
1,696,178 - -1.0
1,696,178 - +1.0
1,696,209 + +0.5
1,696,250 + Psest_1591 0.12 +2.0
1,696,250 + Psest_1591 0.12 -2.7
1,696,250 + Psest_1591 0.12 +0.1
1,696,545 + Psest_1591 0.57 +0.4
1,696,545 + Psest_1591 0.57 +0.0
1,696,545 + Psest_1591 0.57 -0.4
1,696,545 + Psest_1591 0.57 +0.2
1,696,546 - Psest_1591 0.57 +0.9
1,696,546 - Psest_1591 0.57 +1.2
1,696,546 - Psest_1591 0.57 +0.4
1,696,547 + Psest_1591 0.57 -0.1
1,696,547 + Psest_1591 0.57 -0.6
1,696,547 + Psest_1591 0.57 +1.4
1,696,548 - Psest_1591 0.57 +0.6
1,696,548 - Psest_1591 0.57 -1.2
1,696,815 + -0.9
1,696,815 + +3.5
1,696,816 - +1.1
1,696,816 - -0.4
1,696,816 - +0.6
1,696,816 - +0.0
1,696,816 - +2.8
1,696,858 - +0.0
1,696,900 + Psest_1592 0.14 +0.1
1,696,900 + Psest_1592 0.14 +2.8
1,696,900 + Psest_1592 0.14 +0.0
1,696,900 + Psest_1592 0.14 +1.8
1,696,900 + Psest_1592 0.14 +1.8
1,696,901 - Psest_1592 0.14 +0.4
1,696,901 - Psest_1592 0.14 +1.0
1,696,901 - Psest_1592 0.14 -0.0
1,696,901 - Psest_1592 0.14 -0.0

Or see this region's nucleotide sequence