Experiment: Lactate-nitrate; anaerobic; copper stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0764 and Psest_0765 are separated by 409 nucleotides Psest_0765 and Psest_0766 are separated by 12 nucleotides Psest_0766 and Psest_0767 are separated by 213 nucleotides
Psest_0764: Psest_0764 - diguanylate cyclase (GGDEF) domain, at 833,304 to 834,860
_0764
Psest_0765: Psest_0765 - hypothetical protein, at 835,270 to 835,599
_0765
Psest_0766: Psest_0766 - hypothetical protein, at 835,612 to 836,016
_0766
Psest_0767: Psest_0767 - diguanylate cyclase (GGDEF) domain, at 836,230 to 837,636
_0767
Position (kb) 835
836 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 834.284 kb on - strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.379 kb on + strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.380 kb on - strand, within Psest_0764 at 834.409 kb on + strand, within Psest_0764 at 834.519 kb on + strand, within Psest_0764 at 834.539 kb on - strand, within Psest_0764 at 834.580 kb on + strand, within Psest_0764 at 834.580 kb on + strand, within Psest_0764 at 834.580 kb on + strand, within Psest_0764 at 834.580 kb on + strand, within Psest_0764 at 834.580 kb on + strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.581 kb on - strand, within Psest_0764 at 834.695 kb on + strand, within Psest_0764 at 834.732 kb on + strand at 834.864 kb on + strand at 834.881 kb on + strand at 834.896 kb on - strand at 834.921 kb on + strand at 835.005 kb on + strand at 835.006 kb on - strand at 835.122 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.282 kb on + strand at 835.283 kb on - strand at 835.283 kb on - strand at 835.283 kb on - strand at 835.283 kb on - strand at 835.354 kb on + strand, within Psest_0765 at 835.354 kb on + strand, within Psest_0765 at 835.355 kb on - strand, within Psest_0765 at 835.357 kb on - strand, within Psest_0765 at 835.357 kb on - strand, within Psest_0765 at 835.357 kb on - strand, within Psest_0765 at 835.502 kb on + strand, within Psest_0765 at 835.502 kb on + strand, within Psest_0765 at 835.503 kb on - strand, within Psest_0765 at 835.565 kb on + strand, within Psest_0765 at 835.566 kb on - strand, within Psest_0765 at 835.569 kb on + strand at 835.570 kb on - strand at 835.682 kb on + strand, within Psest_0766 at 836.235 kb on + strand at 836.235 kb on + strand at 836.267 kb on - strand at 836.267 kb on - strand at 836.418 kb on + strand, within Psest_0767 at 836.418 kb on + strand, within Psest_0767 at 836.418 kb on + strand, within Psest_0767 at 836.419 kb on - strand, within Psest_0767 at 836.474 kb on + strand, within Psest_0767
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample1 remove 834,284 - Psest_0764 0.63 -1.5 834,379 + Psest_0764 0.69 +0.6 834,379 + Psest_0764 0.69 +0.1 834,379 + Psest_0764 0.69 +0.6 834,379 + Psest_0764 0.69 -1.2 834,379 + Psest_0764 0.69 +0.8 834,379 + Psest_0764 0.69 +1.4 834,379 + Psest_0764 0.69 +0.7 834,379 + Psest_0764 0.69 +0.1 834,379 + Psest_0764 0.69 -1.4 834,379 + Psest_0764 0.69 -0.8 834,380 - Psest_0764 0.69 +0.9 834,380 - Psest_0764 0.69 +0.7 834,380 - Psest_0764 0.69 -1.1 834,380 - Psest_0764 0.69 +0.3 834,380 - Psest_0764 0.69 +0.3 834,380 - Psest_0764 0.69 -0.6 834,380 - Psest_0764 0.69 +1.0 834,380 - Psest_0764 0.69 -0.2 834,380 - Psest_0764 0.69 +0.3 834,380 - Psest_0764 0.69 +0.3 834,380 - Psest_0764 0.69 -0.5 834,380 - Psest_0764 0.69 +0.4 834,380 - Psest_0764 0.69 -0.9 834,380 - Psest_0764 0.69 -1.7 834,380 - Psest_0764 0.69 -0.9 834,380 - Psest_0764 0.69 -0.0 834,380 - Psest_0764 0.69 +1.7 834,380 - Psest_0764 0.69 +0.8 834,380 - Psest_0764 0.69 -1.6 834,380 - Psest_0764 0.69 +0.4 834,380 - Psest_0764 0.69 -0.5 834,409 + Psest_0764 0.71 -0.4 834,519 + Psest_0764 0.78 -0.3 834,539 - Psest_0764 0.79 +0.2 834,580 + Psest_0764 0.82 -2.3 834,580 + Psest_0764 0.82 +1.9 834,580 + Psest_0764 0.82 -0.8 834,580 + Psest_0764 0.82 -5.0 834,580 + Psest_0764 0.82 +0.6 834,581 - Psest_0764 0.82 +2.6 834,581 - Psest_0764 0.82 -1.7 834,581 - Psest_0764 0.82 +0.2 834,581 - Psest_0764 0.82 -0.1 834,581 - Psest_0764 0.82 -0.5 834,581 - Psest_0764 0.82 -3.0 834,581 - Psest_0764 0.82 -0.5 834,581 - Psest_0764 0.82 +0.8 834,695 + Psest_0764 0.89 +2.7 834,732 + -0.2 834,864 + +0.0 834,881 + +0.0 834,896 - -0.5 834,921 + +0.7 835,005 + +0.4 835,006 - -1.0 835,122 + -0.3 835,282 + -1.0 835,282 + +0.4 835,282 + +1.6 835,282 + +0.8 835,282 + -1.2 835,282 + -0.5 835,282 + -1.5 835,282 + -1.3 835,282 + +0.5 835,283 - +1.2 835,283 - -0.6 835,283 - +1.2 835,283 - +1.6 835,354 + Psest_0765 0.25 +1.5 835,354 + Psest_0765 0.25 +2.2 835,355 - Psest_0765 0.26 -2.3 835,357 - Psest_0765 0.26 +2.9 835,357 - Psest_0765 0.26 +0.3 835,357 - Psest_0765 0.26 +1.3 835,502 + Psest_0765 0.70 +1.2 835,502 + Psest_0765 0.70 -1.0 835,503 - Psest_0765 0.71 +2.0 835,565 + Psest_0765 0.89 -0.1 835,566 - Psest_0765 0.90 +2.6 835,569 + +1.8 835,570 - -0.4 835,682 + Psest_0766 0.17 +1.4 836,235 + -1.0 836,235 + -1.7 836,267 - +2.2 836,267 - -1.0 836,418 + Psest_0767 0.13 +1.1 836,418 + Psest_0767 0.13 -0.8 836,418 + Psest_0767 0.13 +0.2 836,419 - Psest_0767 0.13 +0.3 836,474 + Psest_0767 0.17 -0.1
Or see this region's nucleotide sequence