Experiment: Lactate-nitrate; anaerobic; copper stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0619 and Psest_0620 are separated by 214 nucleotides Psest_0620 and Psest_0621 are separated by 4 nucleotides Psest_0621 and Psest_0622 overlap by 4 nucleotides
Psest_0619: Psest_0619 - cation diffusion facilitator family transporter, at 671,288 to 672,208
_0619
Psest_0620: Psest_0620 - Putative protein-S-isoprenylcysteine methyltransferase, at 672,423 to 672,884
_0620
Psest_0621: Psest_0621 - Protein-disulfide isomerase, at 672,889 to 673,569
_0621
Psest_0622: Psest_0622 - Disulfide bond formation protein DsbB, at 673,566 to 674,000
_0622
Position (kb) 672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 671.431 kb on - strand, within Psest_0619 at 671.435 kb on - strand, within Psest_0619 at 671.435 kb on - strand, within Psest_0619 at 671.480 kb on - strand, within Psest_0619 at 671.585 kb on + strand, within Psest_0619 at 671.594 kb on + strand, within Psest_0619 at 671.594 kb on + strand, within Psest_0619 at 671.602 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.714 kb on - strand, within Psest_0619 at 671.720 kb on - strand, within Psest_0619 at 671.728 kb on + strand, within Psest_0619 at 671.728 kb on + strand, within Psest_0619 at 671.786 kb on - strand, within Psest_0619 at 671.831 kb on - strand, within Psest_0619 at 671.831 kb on - strand, within Psest_0619 at 671.886 kb on + strand, within Psest_0619 at 671.945 kb on - strand, within Psest_0619 at 671.947 kb on - strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.994 kb on + strand, within Psest_0619 at 671.995 kb on - strand, within Psest_0619 at 671.995 kb on - strand, within Psest_0619 at 671.995 kb on - strand, within Psest_0619 at 672.094 kb on - strand, within Psest_0619 at 672.094 kb on - strand, within Psest_0619 at 672.103 kb on - strand, within Psest_0619 at 672.150 kb on + strand at 672.151 kb on - strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.206 kb on + strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.207 kb on - strand at 672.236 kb on - strand at 672.236 kb on - strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.243 kb on + strand at 672.244 kb on - strand at 672.244 kb on - strand at 672.355 kb on + strand at 672.356 kb on - strand at 672.356 kb on - strand at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.523 kb on + strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.524 kb on - strand, within Psest_0620 at 672.540 kb on + strand, within Psest_0620 at 672.541 kb on - strand, within Psest_0620 at 672.541 kb on - strand, within Psest_0620 at 672.541 kb on - strand, within Psest_0620 at 672.606 kb on + strand, within Psest_0620 at 672.606 kb on + strand, within Psest_0620 at 672.606 kb on + strand, within Psest_0620 at 672.607 kb on - strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.610 kb on + strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.611 kb on - strand, within Psest_0620 at 672.634 kb on + strand, within Psest_0620 at 672.634 kb on + strand, within Psest_0620 at 672.634 kb on + strand, within Psest_0620 at 672.635 kb on - strand, within Psest_0620 at 672.635 kb on - strand, within Psest_0620 at 672.651 kb on + strand, within Psest_0620 at 672.652 kb on - strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.689 kb on + strand, within Psest_0620 at 672.690 kb on - strand, within Psest_0620 at 672.690 kb on - strand, within Psest_0620 at 672.692 kb on + strand, within Psest_0620 at 672.693 kb on - strand, within Psest_0620 at 672.693 kb on - strand, within Psest_0620 at 672.750 kb on + strand, within Psest_0620 at 672.750 kb on + strand, within Psest_0620 at 672.884 kb on + strand at 672.885 kb on - strand at 672.885 kb on - strand at 672.885 kb on - strand at 672.885 kb on - strand at 673.009 kb on - strand, within Psest_0621 at 673.009 kb on - strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.053 kb on + strand, within Psest_0621 at 673.054 kb on - strand, within Psest_0621 at 673.054 kb on - strand, within Psest_0621 at 673.121 kb on - strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.250 kb on + strand, within Psest_0621 at 673.250 kb on + strand, within Psest_0621 at 673.251 kb on - strand, within Psest_0621 at 673.251 kb on - strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.305 kb on - strand, within Psest_0621 at 673.305 kb on - strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.497 kb on - strand, within Psest_0621 at 673.497 kb on - strand, within Psest_0621 at 673.593 kb on + strand at 673.593 kb on + strand at 673.593 kb on + strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.616 kb on + strand, within Psest_0622 at 673.617 kb on - strand, within Psest_0622 at 673.735 kb on + strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.792 kb on + strand, within Psest_0622 at 673.793 kb on - strand, within Psest_0622
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; copper stress sample1 remove 671,431 - Psest_0619 0.16 +0.2 671,435 - Psest_0619 0.16 +0.1 671,435 - Psest_0619 0.16 -0.4 671,480 - Psest_0619 0.21 +1.4 671,585 + Psest_0619 0.32 +0.2 671,594 + Psest_0619 0.33 -1.0 671,594 + Psest_0619 0.33 -2.4 671,602 + Psest_0619 0.34 -1.2 671,604 + Psest_0619 0.34 -2.4 671,604 + Psest_0619 0.34 +0.8 671,604 + Psest_0619 0.34 -0.5 671,604 + Psest_0619 0.34 -1.5 671,677 - Psest_0619 0.42 -1.0 671,677 - Psest_0619 0.42 -0.9 671,677 - Psest_0619 0.42 +1.6 671,714 - Psest_0619 0.46 -1.6 671,720 - Psest_0619 0.47 +0.6 671,728 + Psest_0619 0.48 -0.5 671,728 + Psest_0619 0.48 -0.7 671,786 - Psest_0619 0.54 +0.0 671,831 - Psest_0619 0.59 -1.8 671,831 - Psest_0619 0.59 +2.3 671,886 + Psest_0619 0.65 -1.1 671,945 - Psest_0619 0.71 -0.9 671,947 - Psest_0619 0.72 +0.3 671,994 + Psest_0619 0.77 -0.6 671,994 + Psest_0619 0.77 -0.4 671,994 + Psest_0619 0.77 -0.5 671,994 + Psest_0619 0.77 -1.7 671,994 + Psest_0619 0.77 +0.6 671,994 + Psest_0619 0.77 +2.8 671,994 + Psest_0619 0.77 -1.5 671,994 + Psest_0619 0.77 +0.7 671,995 - Psest_0619 0.77 -0.1 671,995 - Psest_0619 0.77 -1.7 671,995 - Psest_0619 0.77 -1.9 672,094 - Psest_0619 0.88 +1.1 672,094 - Psest_0619 0.88 +1.7 672,103 - Psest_0619 0.88 -2.2 672,150 + -0.8 672,151 - +1.1 672,206 + +0.1 672,206 + -0.3 672,206 + -1.0 672,206 + -1.1 672,206 + -1.3 672,206 + +1.6 672,206 + +1.3 672,207 - +1.1 672,207 - +0.6 672,207 - -1.0 672,207 - +0.2 672,207 - +0.6 672,236 - +0.7 672,236 - +0.2 672,243 + -1.5 672,243 + -0.0 672,243 + -1.2 672,243 + -0.9 672,243 + -2.6 672,244 - +0.1 672,244 - +0.4 672,355 + +0.0 672,356 - -1.9 672,356 - -2.0 672,523 + Psest_0620 0.22 -1.7 672,523 + Psest_0620 0.22 -0.7 672,523 + Psest_0620 0.22 +0.2 672,523 + Psest_0620 0.22 +1.9 672,523 + Psest_0620 0.22 -0.7 672,523 + Psest_0620 0.22 -1.0 672,523 + Psest_0620 0.22 -0.2 672,523 + Psest_0620 0.22 -1.6 672,523 + Psest_0620 0.22 -0.6 672,523 + Psest_0620 0.22 -1.0 672,523 + Psest_0620 0.22 -1.4 672,523 + Psest_0620 0.22 -1.6 672,523 + Psest_0620 0.22 -0.4 672,524 - Psest_0620 0.22 +0.6 672,524 - Psest_0620 0.22 +0.2 672,524 - Psest_0620 0.22 -3.4 672,524 - Psest_0620 0.22 +2.6 672,524 - Psest_0620 0.22 -0.7 672,524 - Psest_0620 0.22 +0.4 672,524 - Psest_0620 0.22 -0.1 672,524 - Psest_0620 0.22 -0.3 672,540 + Psest_0620 0.25 +1.0 672,541 - Psest_0620 0.26 +0.0 672,541 - Psest_0620 0.26 -0.1 672,541 - Psest_0620 0.26 +0.4 672,606 + Psest_0620 0.40 -0.8 672,606 + Psest_0620 0.40 +0.8 672,606 + Psest_0620 0.40 -0.2 672,607 - Psest_0620 0.40 +0.6 672,610 + Psest_0620 0.40 -0.4 672,610 + Psest_0620 0.40 +0.2 672,610 + Psest_0620 0.40 -1.2 672,610 + Psest_0620 0.40 -1.1 672,610 + Psest_0620 0.40 -0.8 672,610 + Psest_0620 0.40 +1.6 672,610 + Psest_0620 0.40 -0.8 672,611 - Psest_0620 0.41 -1.3 672,611 - Psest_0620 0.41 +0.2 672,611 - Psest_0620 0.41 +0.2 672,611 - Psest_0620 0.41 +2.9 672,611 - Psest_0620 0.41 -2.2 672,611 - Psest_0620 0.41 -0.6 672,611 - Psest_0620 0.41 +0.8 672,611 - Psest_0620 0.41 -0.0 672,611 - Psest_0620 0.41 -0.3 672,611 - Psest_0620 0.41 +1.2 672,611 - Psest_0620 0.41 +1.0 672,611 - Psest_0620 0.41 -0.1 672,611 - Psest_0620 0.41 -0.7 672,611 - Psest_0620 0.41 +1.1 672,611 - Psest_0620 0.41 -0.8 672,611 - Psest_0620 0.41 -1.7 672,611 - Psest_0620 0.41 +0.6 672,611 - Psest_0620 0.41 +1.5 672,611 - Psest_0620 0.41 -2.1 672,611 - Psest_0620 0.41 +1.6 672,611 - Psest_0620 0.41 +0.1 672,611 - Psest_0620 0.41 +0.6 672,611 - Psest_0620 0.41 +1.7 672,634 + Psest_0620 0.46 -0.9 672,634 + Psest_0620 0.46 -1.3 672,634 + Psest_0620 0.46 +0.3 672,635 - Psest_0620 0.46 -1.9 672,635 - Psest_0620 0.46 +0.2 672,651 + Psest_0620 0.49 -1.8 672,652 - Psest_0620 0.50 +0.1 672,689 + Psest_0620 0.58 -1.3 672,689 + Psest_0620 0.58 +0.1 672,689 + Psest_0620 0.58 +0.2 672,689 + Psest_0620 0.58 -0.8 672,689 + Psest_0620 0.58 +1.2 672,690 - Psest_0620 0.58 +1.4 672,690 - Psest_0620 0.58 -1.6 672,692 + Psest_0620 0.58 -1.2 672,693 - Psest_0620 0.58 +0.4 672,693 - Psest_0620 0.58 -0.8 672,750 + Psest_0620 0.71 +0.8 672,750 + Psest_0620 0.71 +1.6 672,884 + -2.1 672,885 - +0.2 672,885 - -1.0 672,885 - +0.5 672,885 - -0.5 673,009 - Psest_0621 0.18 -2.5 673,009 - Psest_0621 0.18 +2.6 673,053 + Psest_0621 0.24 -0.8 673,053 + Psest_0621 0.24 +1.2 673,053 + Psest_0621 0.24 -2.4 673,053 + Psest_0621 0.24 -1.5 673,053 + Psest_0621 0.24 +0.1 673,053 + Psest_0621 0.24 -0.8 673,054 - Psest_0621 0.24 -0.9 673,054 - Psest_0621 0.24 +0.6 673,121 - Psest_0621 0.34 -0.1 673,246 + Psest_0621 0.52 +0.8 673,246 + Psest_0621 0.52 +1.2 673,246 + Psest_0621 0.52 -0.0 673,246 + Psest_0621 0.52 -0.1 673,246 + Psest_0621 0.52 +0.3 673,246 + Psest_0621 0.52 +0.2 673,246 + Psest_0621 0.52 -1.5 673,246 + Psest_0621 0.52 +0.1 673,246 + Psest_0621 0.52 -1.7 673,246 + Psest_0621 0.52 +0.1 673,246 + Psest_0621 0.52 +2.7 673,246 + Psest_0621 0.52 -0.5 673,247 - Psest_0621 0.53 +1.7 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.8 673,247 - Psest_0621 0.53 +2.6 673,247 - Psest_0621 0.53 -0.7 673,247 - Psest_0621 0.53 -0.5 673,247 - Psest_0621 0.53 +0.3 673,247 - Psest_0621 0.53 +0.1 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.7 673,247 - Psest_0621 0.53 +1.1 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.1 673,247 - Psest_0621 0.53 -2.6 673,247 - Psest_0621 0.53 +1.3 673,247 - Psest_0621 0.53 +0.9 673,247 - Psest_0621 0.53 +0.0 673,247 - Psest_0621 0.53 -1.0 673,247 - Psest_0621 0.53 -0.6 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 -0.7 673,247 - Psest_0621 0.53 +0.6 673,247 - Psest_0621 0.53 +0.4 673,247 - Psest_0621 0.53 -1.3 673,247 - Psest_0621 0.53 -2.2 673,247 - Psest_0621 0.53 +2.2 673,247 - Psest_0621 0.53 -1.4 673,247 - Psest_0621 0.53 -2.5 673,247 - Psest_0621 0.53 +0.1 673,247 - Psest_0621 0.53 -1.2 673,247 - Psest_0621 0.53 +1.7 673,247 - Psest_0621 0.53 +0.3 673,247 - Psest_0621 0.53 +0.0 673,250 + Psest_0621 0.53 +0.5 673,250 + Psest_0621 0.53 -0.9 673,251 - Psest_0621 0.53 +0.6 673,251 - Psest_0621 0.53 -0.8 673,304 + Psest_0621 0.61 -1.0 673,304 + Psest_0621 0.61 -0.3 673,304 + Psest_0621 0.61 +0.4 673,304 + Psest_0621 0.61 +1.6 673,305 - Psest_0621 0.61 +0.3 673,305 - Psest_0621 0.61 +3.4 673,496 + Psest_0621 0.89 +0.2 673,496 + Psest_0621 0.89 -0.7 673,496 + Psest_0621 0.89 -1.4 673,496 + Psest_0621 0.89 -0.5 673,496 + Psest_0621 0.89 -2.4 673,497 - Psest_0621 0.89 -1.6 673,497 - Psest_0621 0.89 -0.5 673,593 + +0.0 673,593 + +1.3 673,593 + -0.2 673,594 - -0.9 673,594 - +0.6 673,594 - -0.3 673,594 - -0.4 673,616 + Psest_0622 0.11 -0.3 673,617 - Psest_0622 0.12 -3.1 673,735 + Psest_0622 0.39 -0.4 673,736 - Psest_0622 0.39 -1.1 673,736 - Psest_0622 0.39 -0.2 673,736 - Psest_0622 0.39 -0.2 673,792 + Psest_0622 0.52 -1.3 673,793 - Psest_0622 0.52 +1.8
Or see this region's nucleotide sequence