Experiment: Lactate-nitrate; anaerobic; nickel stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0853 and Psest_0854 are separated by 18 nucleotides Psest_0854 and Psest_0855 are separated by 70 nucleotides Psest_0855 and Psest_0856 are separated by 12 nucleotides
Psest_0853: Psest_0853 - 6-phosphogluconolactonase, at 923,987 to 924,700
_0853
Psest_0854: Psest_0854 - Entner-Doudoroff aldolase, at 924,719 to 925,456
_0854
Psest_0855: Psest_0855 - NAD-dependent aldehyde dehydrogenases, at 925,527 to 927,155
_0855
Psest_0856: Psest_0856 - Predicted oxidoreductase, at 927,168 to 928,031
_0856
Position (kb) 925
926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 924.686 kb on + strand at 924.687 kb on - strand at 924.687 kb on - strand at 924.727 kb on + strand at 924.728 kb on - strand at 925.262 kb on + strand, within Psest_0854 at 925.263 kb on - strand, within Psest_0854 at 925.620 kb on + strand at 925.621 kb on - strand at 925.621 kb on - strand at 925.788 kb on + strand, within Psest_0855 at 925.962 kb on + strand, within Psest_0855 at 925.962 kb on + strand, within Psest_0855 at 925.963 kb on - strand, within Psest_0855 at 925.963 kb on - strand, within Psest_0855 at 926.088 kb on + strand, within Psest_0855 at 926.088 kb on + strand, within Psest_0855 at 926.766 kb on + strand, within Psest_0855 at 926.835 kb on + strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.836 kb on - strand, within Psest_0855 at 926.977 kb on - strand, within Psest_0855 at 927.022 kb on + strand at 927.022 kb on + strand at 927.022 kb on + strand at 927.023 kb on - strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.144 kb on + strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.145 kb on - strand at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.315 kb on + strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.316 kb on - strand, within Psest_0856 at 927.453 kb on + strand, within Psest_0856 at 927.454 kb on - strand, within Psest_0856 at 927.725 kb on - strand, within Psest_0856 at 927.725 kb on - strand, within Psest_0856 at 927.993 kb on + strand at 927.993 kb on + strand at 927.993 kb on + strand at 927.993 kb on + strand at 928.101 kb on + strand at 928.102 kb on - strand at 928.102 kb on - strand at 928.102 kb on - strand at 928.104 kb on + strand at 928.105 kb on - strand at 928.105 kb on - strand at 928.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3 remove 924,686 + +1.8 924,687 - -1.2 924,687 - -0.7 924,727 + +2.9 924,728 - -1.4 925,262 + Psest_0854 0.74 +0.6 925,263 - Psest_0854 0.74 +0.9 925,620 + -0.7 925,621 - -2.4 925,621 - -1.4 925,788 + Psest_0855 0.16 -0.5 925,962 + Psest_0855 0.27 -1.0 925,962 + Psest_0855 0.27 -2.2 925,963 - Psest_0855 0.27 -3.2 925,963 - Psest_0855 0.27 -1.0 926,088 + Psest_0855 0.34 +1.6 926,088 + Psest_0855 0.34 +0.4 926,766 + Psest_0855 0.76 +0.8 926,835 + Psest_0855 0.80 -3.1 926,836 - Psest_0855 0.80 -2.6 926,836 - Psest_0855 0.80 -2.4 926,836 - Psest_0855 0.80 -1.8 926,836 - Psest_0855 0.80 -0.9 926,836 - Psest_0855 0.80 +0.6 926,977 - Psest_0855 0.89 -1.8 927,022 + -1.8 927,022 + -1.1 927,022 + -1.9 927,023 - -3.8 927,144 + -0.4 927,144 + -0.1 927,144 + -0.1 927,144 + +0.4 927,144 + -0.3 927,144 + -0.1 927,144 + +0.2 927,144 + -0.7 927,145 - +0.6 927,145 - -1.0 927,145 - -0.1 927,145 - -0.4 927,145 - +0.6 927,145 - -0.1 927,145 - +0.6 927,315 + Psest_0856 0.17 -0.2 927,315 + Psest_0856 0.17 +0.0 927,315 + Psest_0856 0.17 +1.9 927,315 + Psest_0856 0.17 -0.6 927,316 - Psest_0856 0.17 -1.2 927,316 - Psest_0856 0.17 -2.1 927,316 - Psest_0856 0.17 -0.4 927,316 - Psest_0856 0.17 -0.7 927,316 - Psest_0856 0.17 -0.2 927,316 - Psest_0856 0.17 -0.0 927,453 + Psest_0856 0.33 -0.0 927,454 - Psest_0856 0.33 -1.0 927,725 - Psest_0856 0.64 +0.2 927,725 - Psest_0856 0.64 +0.5 927,993 + +2.2 927,993 + -0.0 927,993 + -0.5 927,993 + -0.2 928,101 + +1.8 928,102 - +1.4 928,102 - +0.9 928,102 - +0.2 928,104 + -1.4 928,105 - -0.8 928,105 - -0.3 928,105 - -0.4
Or see this region's nucleotide sequence