Experiment: Lactate-nitrate; anaerobic; nickel stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0801 and Psest_0802 are separated by 10 nucleotides Psest_0802 and Psest_0803 are separated by 70 nucleotides Psest_0803 and Psest_0804 are separated by 8 nucleotides
Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950
_0801
Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821
_0802
Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419
_0803
Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445
_0804
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 876.972 kb on - strand at 877.073 kb on + strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.082 kb on + strand, within Psest_0802 at 877.160 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.374 kb on - strand, within Psest_0802 at 877.495 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.623 kb on - strand, within Psest_0802 at 877.743 kb on + strand at 877.743 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.883 kb on + strand at 877.884 kb on - strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.888 kb on - strand at 877.888 kb on - strand at 878.016 kb on - strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.298 kb on + strand, within Psest_0803 at 878.393 kb on + strand at 878.393 kb on + strand at 878.429 kb on + strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.485 kb on - strand at 878.619 kb on - strand at 878.635 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.650 kb on - strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.967 kb on - strand, within Psest_0804 at 879.014 kb on + strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.124 kb on + strand, within Psest_0804 at 879.182 kb on + strand, within Psest_0804 at 879.294 kb on - strand, within Psest_0804
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3 remove 876,972 - -0.3 877,073 + Psest_0802 0.13 -0.3 877,074 - Psest_0802 0.13 -2.7 877,074 - Psest_0802 0.13 -0.7 877,082 + Psest_0802 0.14 -0.3 877,160 + Psest_0802 0.23 -0.0 877,218 + Psest_0802 0.30 +0.3 877,218 + Psest_0802 0.30 +1.6 877,218 + Psest_0802 0.30 +0.7 877,218 + Psest_0802 0.30 -0.6 877,289 + Psest_0802 0.38 +0.7 877,289 + Psest_0802 0.38 -0.1 877,289 + Psest_0802 0.38 -0.6 877,289 + Psest_0802 0.38 +1.6 877,289 + Psest_0802 0.38 +0.6 877,289 + Psest_0802 0.38 +0.2 877,290 - Psest_0802 0.38 +1.6 877,290 - Psest_0802 0.38 -0.5 877,290 - Psest_0802 0.38 +0.3 877,290 - Psest_0802 0.38 -1.4 877,290 - Psest_0802 0.38 +0.6 877,290 - Psest_0802 0.38 +1.2 877,290 - Psest_0802 0.38 -1.3 877,290 - Psest_0802 0.38 -0.5 877,290 - Psest_0802 0.38 +0.1 877,290 - Psest_0802 0.38 +0.6 877,295 + Psest_0802 0.39 -0.4 877,295 + Psest_0802 0.39 +1.0 877,295 + Psest_0802 0.39 -0.9 877,295 + Psest_0802 0.39 -1.0 877,295 + Psest_0802 0.39 +3.3 877,295 + Psest_0802 0.39 +0.0 877,296 - Psest_0802 0.39 -0.1 877,296 - Psest_0802 0.39 +0.8 877,296 - Psest_0802 0.39 +1.0 877,374 - Psest_0802 0.48 +0.5 877,495 + Psest_0802 0.62 +0.4 877,622 + Psest_0802 0.77 -0.7 877,622 + Psest_0802 0.77 +0.9 877,623 - Psest_0802 0.77 -1.4 877,743 + -1.7 877,743 + -0.2 877,855 + +1.1 877,855 + +0.8 877,855 + +0.6 877,855 + -0.8 877,856 - -1.4 877,856 - +2.2 877,856 - -0.9 877,856 - -1.7 877,883 + +0.8 877,884 - -0.4 877,887 + +1.2 877,887 + +1.0 877,887 + +0.2 877,887 + -0.1 877,887 + -0.8 877,888 - -0.2 877,888 - +0.6 878,016 - Psest_0803 0.23 -0.8 878,262 + Psest_0803 0.70 +0.0 878,262 + Psest_0803 0.70 +0.3 878,262 + Psest_0803 0.70 +0.0 878,262 + Psest_0803 0.70 +0.6 878,262 + Psest_0803 0.70 +1.8 878,262 + Psest_0803 0.70 -0.6 878,262 + Psest_0803 0.70 +0.6 878,263 - Psest_0803 0.70 -1.3 878,263 - Psest_0803 0.70 +1.9 878,263 - Psest_0803 0.70 +2.9 878,263 - Psest_0803 0.70 -1.0 878,298 + Psest_0803 0.77 +1.4 878,393 + -0.1 878,393 + -1.0 878,429 + +0.1 878,430 - +0.5 878,430 - -2.4 878,430 - +0.3 878,484 + -0.7 878,484 + +1.8 878,484 + -1.3 878,484 + +0.8 878,485 - -0.4 878,619 - -0.9 878,635 + +0.9 878,639 + +0.3 878,639 + +1.2 878,639 + +0.8 878,640 - +1.0 878,640 - -2.2 878,640 - +0.2 878,640 - -0.4 878,640 - +0.2 878,640 - +0.6 878,640 - +0.8 878,640 - +0.0 878,650 - -0.4 878,651 + -0.3 878,651 + +0.5 878,651 + +0.6 878,652 - -0.4 878,652 - -0.8 878,652 - +1.0 878,652 - +0.1 878,652 - +1.8 878,784 - Psest_0804 0.12 -0.3 878,784 - Psest_0804 0.12 -0.3 878,784 - Psest_0804 0.12 +1.1 878,784 - Psest_0804 0.12 -0.2 878,939 + Psest_0804 0.17 -0.4 878,939 + Psest_0804 0.17 -0.0 878,939 + Psest_0804 0.17 -0.0 878,939 + Psest_0804 0.17 +0.9 878,940 - Psest_0804 0.17 +0.6 878,940 - Psest_0804 0.17 +0.0 878,940 - Psest_0804 0.17 -1.7 878,967 - Psest_0804 0.18 +1.0 879,014 + Psest_0804 0.19 -0.5 879,015 - Psest_0804 0.19 +0.9 879,015 - Psest_0804 0.19 +0.0 879,124 + Psest_0804 0.23 -0.6 879,182 + Psest_0804 0.25 -1.6 879,294 - Psest_0804 0.29 -0.2
Or see this region's nucleotide sequence