Experiment: Lactate-nitrate; anaerobic; nickel stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0797 and Psest_0798 are separated by 45 nucleotides Psest_0798 and Psest_0799 are separated by 322 nucleotides Psest_0799 and Psest_0800 are separated by 118 nucleotides
Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874
_0797
Psest_0798: Psest_0798 - twin arginine-targeting protein translocase, TatA/E family, at 872,920 to 873,102
_0798
Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615
_0799
Psest_0800: Psest_0800 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 874,734 to 875,477
_0800
Position (kb) 873
874
875 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.912 kb on - strand at 872.928 kb on + strand at 873.100 kb on + strand at 873.100 kb on + strand at 873.101 kb on - strand at 873.191 kb on - strand at 873.270 kb on + strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.328 kb on - strand at 873.334 kb on + strand at 873.334 kb on + strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.351 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.432 kb on + strand at 873.432 kb on + strand at 873.433 kb on - strand at 873.457 kb on + strand at 873.853 kb on + strand, within Psest_0799 at 873.853 kb on + strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 874.208 kb on + strand, within Psest_0799 at 874.252 kb on + strand, within Psest_0799 at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.596 kb on + strand at 874.597 kb on - strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.665 kb on - strand at 874.668 kb on + strand at 875.078 kb on + strand, within Psest_0800 at 875.078 kb on + strand, within Psest_0800 at 875.079 kb on - strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.178 kb on - strand, within Psest_0800 at 875.249 kb on + strand, within Psest_0800 at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.598 kb on + strand at 875.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3 remove 872,581 + Psest_0797 0.49 -0.6 872,581 + Psest_0797 0.49 -0.2 872,581 + Psest_0797 0.49 -1.0 872,581 + Psest_0797 0.49 -1.5 872,581 + Psest_0797 0.49 +2.6 872,582 - Psest_0797 0.49 -1.1 872,582 - Psest_0797 0.49 +1.2 872,582 - Psest_0797 0.49 +1.2 872,582 - Psest_0797 0.49 +0.1 872,653 + Psest_0797 0.61 +3.2 872,653 + Psest_0797 0.61 -0.7 872,654 - Psest_0797 0.61 +0.0 872,654 - Psest_0797 0.61 -0.9 872,654 - Psest_0797 0.61 -0.4 872,654 - Psest_0797 0.61 -0.6 872,654 - Psest_0797 0.61 -1.7 872,656 + Psest_0797 0.62 +0.6 872,656 + Psest_0797 0.62 +0.5 872,656 + Psest_0797 0.62 +0.4 872,656 + Psest_0797 0.62 +0.0 872,656 + Psest_0797 0.62 -0.9 872,656 + Psest_0797 0.62 +1.1 872,656 + Psest_0797 0.62 +1.4 872,656 + Psest_0797 0.62 +0.5 872,656 + Psest_0797 0.62 -0.7 872,656 + Psest_0797 0.62 -1.0 872,657 - Psest_0797 0.62 +0.0 872,657 - Psest_0797 0.62 -2.4 872,657 - Psest_0797 0.62 -0.3 872,657 - Psest_0797 0.62 +0.2 872,657 - Psest_0797 0.62 +0.0 872,657 - Psest_0797 0.62 +0.5 872,657 - Psest_0797 0.62 -0.4 872,657 - Psest_0797 0.62 +0.0 872,657 - Psest_0797 0.62 -1.0 872,657 - Psest_0797 0.62 -1.0 872,657 - Psest_0797 0.62 -1.0 872,657 - Psest_0797 0.62 -0.2 872,657 - Psest_0797 0.62 +0.6 872,657 - Psest_0797 0.62 +0.4 872,657 - Psest_0797 0.62 -0.5 872,657 - Psest_0797 0.62 -1.0 872,912 - +0.7 872,928 + -0.6 873,100 + -0.4 873,100 + -0.2 873,101 - -0.6 873,191 - -0.2 873,270 + -0.2 873,271 - +1.3 873,271 - +0.0 873,271 - -1.9 873,320 + +0.8 873,320 + +0.9 873,320 + -0.4 873,328 - -0.8 873,334 + -0.4 873,334 + +0.6 873,335 - -0.4 873,335 - -1.7 873,335 - -0.4 873,335 - -2.1 873,335 - -2.7 873,335 - -1.9 873,351 + -0.4 873,388 + -1.4 873,388 + -1.1 873,388 + -1.0 873,388 + -1.6 873,389 - -1.9 873,389 - -2.7 873,389 - -4.6 873,389 - +0.4 873,432 + -1.5 873,432 + -1.2 873,433 - -1.9 873,457 + -3.1 873,853 + Psest_0799 0.36 +0.0 873,853 + Psest_0799 0.36 -1.3 873,854 - Psest_0799 0.36 -3.3 873,854 - Psest_0799 0.36 +0.2 874,208 + Psest_0799 0.66 -0.2 874,252 + Psest_0799 0.69 +0.1 874,556 + +0.2 874,556 + +0.5 874,556 + -0.4 874,556 + -3.0 874,556 + +0.6 874,556 + -0.6 874,556 + +0.6 874,556 + -0.1 874,556 + +0.4 874,556 + -0.7 874,557 - -0.1 874,557 - -1.5 874,557 - +0.0 874,557 - -1.4 874,557 - -2.6 874,557 - -1.6 874,557 - -0.2 874,557 - -2.1 874,557 - +0.6 874,596 + -0.3 874,597 - -2.7 874,664 + +0.2 874,664 + +1.1 874,664 + +0.3 874,664 + -0.8 874,665 - -2.7 874,668 + +0.7 875,078 + Psest_0800 0.46 -2.0 875,078 + Psest_0800 0.46 -1.4 875,079 - Psest_0800 0.46 -1.7 875,175 + Psest_0800 0.59 +0.0 875,175 + Psest_0800 0.59 -3.6 875,175 + Psest_0800 0.59 -2.4 875,175 + Psest_0800 0.59 -1.9 875,175 + Psest_0800 0.59 -2.2 875,175 + Psest_0800 0.59 -1.1 875,175 + Psest_0800 0.59 -0.4 875,175 + Psest_0800 0.59 -2.6 875,176 - Psest_0800 0.59 +0.6 875,176 - Psest_0800 0.59 -2.0 875,176 - Psest_0800 0.59 -1.7 875,176 - Psest_0800 0.59 -0.4 875,176 - Psest_0800 0.59 +0.6 875,176 - Psest_0800 0.59 -1.7 875,178 - Psest_0800 0.60 -0.9 875,249 + Psest_0800 0.69 -1.9 875,465 + -1.1 875,465 + -1.5 875,465 + -2.3 875,465 + -1.7 875,465 + -1.5 875,465 + -1.4 875,466 - +0.0 875,466 - -2.0 875,466 - -1.7 875,466 - -2.9 875,466 - -0.7 875,466 - -0.4 875,466 - -1.2 875,598 + +0.8 875,599 - +0.5
Or see this region's nucleotide sequence