Experiment: Lactate-nitrate; anaerobic; nickel stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0606 and Psest_0607 are separated by 86 nucleotides
Psest_0606: Psest_0606 - Predicted hydrolase (HAD superfamily), at 657,339 to 657,971
_0606
Psest_0607: Psest_0607 - Co/Zn/Cd efflux system component, at 658,058 to 658,948
_0607
Position (kb) 657
658 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 656.398 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.413 kb on - strand at 656.427 kb on - strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.571 kb on - strand at 656.574 kb on + strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.651 kb on + strand at 656.652 kb on - strand at 656.652 kb on - strand at 656.688 kb on + strand at 656.689 kb on - strand at 656.703 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.743 kb on - strand at 656.743 kb on - strand at 656.743 kb on - strand at 656.817 kb on + strand at 656.818 kb on - strand at 656.818 kb on - strand at 656.876 kb on + strand at 656.876 kb on + strand at 656.876 kb on + strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.904 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 657.031 kb on - strand at 657.031 kb on - strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.210 kb on - strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.352 kb on + strand at 657.353 kb on - strand at 657.386 kb on - strand at 657.510 kb on + strand, within Psest_0606 at 657.511 kb on - strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.542 kb on - strand, within Psest_0606 at 657.542 kb on - strand, within Psest_0606 at 657.545 kb on + strand, within Psest_0606 at 657.694 kb on + strand, within Psest_0606 at 657.715 kb on - strand, within Psest_0606 at 657.715 kb on - strand, within Psest_0606 at 657.743 kb on - strand, within Psest_0606 at 657.743 kb on - strand, within Psest_0606 at 657.762 kb on + strand, within Psest_0606 at 657.763 kb on - strand, within Psest_0606 at 657.763 kb on - strand, within Psest_0606 at 657.837 kb on - strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.949 kb on - strand at 657.989 kb on + strand at 657.989 kb on + strand at 657.990 kb on - strand at 658.002 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.018 kb on - strand at 658.018 kb on - strand at 658.138 kb on - strand at 658.138 kb on - strand at 658.175 kb on + strand, within Psest_0607 at 658.175 kb on + strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.317 kb on - strand, within Psest_0607 at 658.343 kb on + strand, within Psest_0607 at 658.344 kb on - strand, within Psest_0607 at 658.344 kb on - strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.364 kb on + strand, within Psest_0607 at 658.365 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.467 kb on + strand, within Psest_0607 at 658.575 kb on - strand, within Psest_0607 at 658.580 kb on + strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.587 kb on - strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.607 kb on - strand, within Psest_0607 at 658.739 kb on + strand, within Psest_0607 at 658.740 kb on - strand, within Psest_0607 at 658.849 kb on - strand, within Psest_0607 at 658.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3 remove 656,398 + +0.6 656,398 + +0.3 656,398 + -2.8 656,399 - -0.1 656,399 - -1.1 656,412 + +1.4 656,412 + +0.2 656,412 + -3.5 656,412 + -0.8 656,413 - +1.0 656,427 - -1.2 656,478 + -1.2 656,478 + -0.4 656,478 + +0.4 656,479 - -0.7 656,479 - -0.2 656,479 - -1.1 656,479 - -0.3 656,571 - +0.8 656,574 + -0.9 656,575 - -0.7 656,575 - +2.4 656,575 - +0.8 656,575 - -0.2 656,575 - +3.0 656,575 - -0.3 656,575 - +0.5 656,575 - -0.4 656,575 - -0.6 656,575 - +0.4 656,575 - -1.4 656,575 - -0.9 656,651 + +0.0 656,652 - +0.0 656,652 - -0.4 656,688 + -0.5 656,689 - -0.1 656,703 + +1.0 656,742 + -0.8 656,742 + -0.4 656,742 + -0.4 656,742 + -0.3 656,742 + -1.7 656,742 + -0.7 656,742 + -1.7 656,742 + -0.6 656,743 - +1.8 656,743 - -1.4 656,743 - -0.9 656,817 + +1.2 656,818 - +0.6 656,818 - +0.1 656,876 + +0.6 656,876 + +0.6 656,876 + -0.4 656,877 - -1.4 656,877 - -0.5 656,877 - +1.0 656,877 - -1.7 656,904 + -1.3 656,964 + -0.7 656,964 + +0.6 656,964 + -0.4 656,964 + +0.3 656,964 + -0.7 656,965 - -1.4 656,965 - +0.6 656,965 - +0.7 656,965 - -1.1 656,965 - -4.0 656,965 - -2.4 656,965 - +1.9 657,031 - -2.2 657,031 - -0.9 657,081 + -0.6 657,081 + -3.3 657,081 + +0.1 657,081 + -0.5 657,081 + +0.0 657,210 - -0.8 657,343 + +0.9 657,343 + +1.6 657,343 + +0.2 657,343 + -2.0 657,343 + -0.1 657,344 - -1.0 657,344 - +0.5 657,344 - -0.6 657,344 - -1.4 657,352 + -1.4 657,353 - -0.1 657,386 - -1.5 657,510 + Psest_0606 0.27 +0.3 657,511 - Psest_0606 0.27 -0.9 657,541 + Psest_0606 0.32 -3.2 657,541 + Psest_0606 0.32 -0.7 657,541 + Psest_0606 0.32 -0.6 657,541 + Psest_0606 0.32 +5.7 657,541 + Psest_0606 0.32 -1.8 657,542 - Psest_0606 0.32 -2.1 657,542 - Psest_0606 0.32 +0.3 657,545 + Psest_0606 0.33 -1.0 657,694 + Psest_0606 0.56 +0.1 657,715 - Psest_0606 0.59 -0.1 657,715 - Psest_0606 0.59 +1.5 657,743 - Psest_0606 0.64 -3.2 657,743 - Psest_0606 0.64 -1.7 657,762 + Psest_0606 0.67 -0.8 657,763 - Psest_0606 0.67 +0.0 657,763 - Psest_0606 0.67 +0.3 657,837 - Psest_0606 0.79 -2.4 657,877 + Psest_0606 0.85 +0.3 657,877 + Psest_0606 0.85 -0.1 657,877 + Psest_0606 0.85 +0.6 657,877 + Psest_0606 0.85 -0.8 657,877 + Psest_0606 0.85 +0.5 657,877 + Psest_0606 0.85 -1.7 657,877 + Psest_0606 0.85 -0.4 657,878 - Psest_0606 0.85 -1.3 657,878 - Psest_0606 0.85 +1.0 657,878 - Psest_0606 0.85 -0.3 657,878 - Psest_0606 0.85 -1.1 657,878 - Psest_0606 0.85 -2.2 657,878 - Psest_0606 0.85 +0.6 657,878 - Psest_0606 0.85 -0.7 657,878 - Psest_0606 0.85 -0.7 657,949 - -0.5 657,989 + +0.2 657,989 + -2.5 657,990 - -0.4 658,002 + -0.7 658,017 + -1.0 658,017 + -0.9 658,017 + -0.9 658,017 + -0.1 658,018 - +0.0 658,018 - +0.2 658,138 - +0.5 658,138 - +1.4 658,175 + Psest_0607 0.13 -0.8 658,175 + Psest_0607 0.13 +0.6 658,215 - Psest_0607 0.18 +1.2 658,215 - Psest_0607 0.18 -0.8 658,215 - Psest_0607 0.18 -0.7 658,317 - Psest_0607 0.29 -0.0 658,343 + Psest_0607 0.32 +0.9 658,344 - Psest_0607 0.32 -0.6 658,344 - Psest_0607 0.32 -0.3 658,345 + Psest_0607 0.32 -1.2 658,345 + Psest_0607 0.32 +0.2 658,345 + Psest_0607 0.32 +0.5 658,345 + Psest_0607 0.32 -1.0 658,345 + Psest_0607 0.32 -0.5 658,346 - Psest_0607 0.32 -0.4 658,346 - Psest_0607 0.32 -2.1 658,346 - Psest_0607 0.32 +0.0 658,346 - Psest_0607 0.32 -1.1 658,346 - Psest_0607 0.32 +1.6 658,346 - Psest_0607 0.32 +0.7 658,346 - Psest_0607 0.32 -0.9 658,346 - Psest_0607 0.32 -1.5 658,364 + Psest_0607 0.34 +1.2 658,365 - Psest_0607 0.34 +0.3 658,453 - Psest_0607 0.44 +2.2 658,453 - Psest_0607 0.44 -0.1 658,467 + Psest_0607 0.46 -2.8 658,575 - Psest_0607 0.58 -0.7 658,580 + Psest_0607 0.59 +0.3 658,581 - Psest_0607 0.59 +1.9 658,581 - Psest_0607 0.59 +1.4 658,586 + Psest_0607 0.59 -0.3 658,586 + Psest_0607 0.59 +0.0 658,586 + Psest_0607 0.59 +0.2 658,586 + Psest_0607 0.59 +0.6 658,587 - Psest_0607 0.59 -0.1 658,606 + Psest_0607 0.62 -0.6 658,606 + Psest_0607 0.62 -0.9 658,606 + Psest_0607 0.62 +3.2 658,607 - Psest_0607 0.62 -0.7 658,739 + Psest_0607 0.76 -1.4 658,740 - Psest_0607 0.77 -0.3 658,849 - Psest_0607 0.89 -0.8 658,892 - -0.1
Or see this region's nucleotide sequence