Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0584

Experiment: Lactate-nitrate; anaerobic; nickel stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0583 and Psest_0584 are separated by 12 nucleotidesPsest_0584 and Psest_0585 overlap by 11 nucleotidesPsest_0585 and Psest_0586 are separated by 9 nucleotides Psest_0583: Psest_0583 - copper-resistance protein, CopA family, at 633,488 to 635,329 _0583 Psest_0584: Psest_0584 - hypothetical protein, at 635,342 to 635,644 _0584 Psest_0585: Psest_0585 - Uncharacterized protein involved in copper resistance, at 635,634 to 636,632 _0585 Psest_0586: Psest_0586 - hypothetical protein, at 636,642 to 637,451 _0586 Position (kb) 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 634.365 kb on + strand, within Psest_0583at 634.366 kb on - strand, within Psest_0583at 634.366 kb on - strand, within Psest_0583at 634.385 kb on + strand, within Psest_0583at 634.385 kb on + strand, within Psest_0583at 634.385 kb on + strand, within Psest_0583at 634.385 kb on + strand, within Psest_0583at 634.385 kb on + strand, within Psest_0583at 634.386 kb on - strand, within Psest_0583at 634.386 kb on - strand, within Psest_0583at 634.436 kb on + strand, within Psest_0583at 634.436 kb on + strand, within Psest_0583at 634.436 kb on + strand, within Psest_0583at 634.436 kb on + strand, within Psest_0583at 634.436 kb on + strand, within Psest_0583at 634.436 kb on + strand, within Psest_0583at 634.437 kb on - strand, within Psest_0583at 634.437 kb on - strand, within Psest_0583at 634.437 kb on - strand, within Psest_0583at 634.437 kb on - strand, within Psest_0583at 634.437 kb on - strand, within Psest_0583at 634.437 kb on - strand, within Psest_0583at 634.472 kb on + strand, within Psest_0583at 634.473 kb on - strand, within Psest_0583at 634.473 kb on - strand, within Psest_0583at 634.509 kb on - strand, within Psest_0583at 634.669 kb on + strand, within Psest_0583at 634.670 kb on - strand, within Psest_0583at 634.804 kb on + strand, within Psest_0583at 634.804 kb on + strand, within Psest_0583at 634.804 kb on + strand, within Psest_0583at 634.804 kb on + strand, within Psest_0583at 634.804 kb on + strand, within Psest_0583at 634.835 kb on - strand, within Psest_0583at 634.873 kb on + strand, within Psest_0583at 634.900 kb on - strand, within Psest_0583at 634.928 kb on + strand, within Psest_0583at 634.928 kb on + strand, within Psest_0583at 634.928 kb on + strand, within Psest_0583at 634.928 kb on + strand, within Psest_0583at 634.928 kb on + strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.929 kb on - strand, within Psest_0583at 634.931 kb on - strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on + strand, within Psest_0583at 635.040 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.041 kb on - strand, within Psest_0583at 635.075 kb on + strand, within Psest_0583at 635.075 kb on + strand, within Psest_0583at 635.075 kb on + strand, within Psest_0583at 635.076 kb on - strand, within Psest_0583at 635.143 kb on + strand, within Psest_0583at 635.143 kb on + strand, within Psest_0583at 635.143 kb on + strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.144 kb on - strand, within Psest_0583at 635.264 kb on + strandat 635.264 kb on + strandat 635.265 kb on - strandat 635.265 kb on - strandat 635.277 kb on + strandat 635.277 kb on + strandat 635.278 kb on - strandat 635.278 kb on - strandat 635.278 kb on - strandat 635.327 kb on + strandat 635.328 kb on - strandat 635.328 kb on - strandat 635.339 kb on + strandat 635.339 kb on + strandat 635.339 kb on + strandat 635.339 kb on + strandat 635.339 kb on + strandat 635.340 kb on - strandat 635.340 kb on - strandat 635.340 kb on - strandat 635.340 kb on - strandat 635.362 kb on + strandat 635.362 kb on + strandat 635.362 kb on + strandat 635.362 kb on + strandat 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.413 kb on + strand, within Psest_0584at 635.414 kb on - strand, within Psest_0584at 635.414 kb on - strand, within Psest_0584at 635.414 kb on - strand, within Psest_0584at 635.414 kb on - strand, within Psest_0584at 635.414 kb on - strand, within Psest_0584at 635.518 kb on + strand, within Psest_0584at 635.519 kb on - strand, within Psest_0584at 635.614 kb on + strandat 635.615 kb on - strandat 635.615 kb on - strandat 635.642 kb on + strandat 635.798 kb on + strand, within Psest_0585at 635.799 kb on - strand, within Psest_0585at 635.861 kb on + strand, within Psest_0585at 635.861 kb on + strand, within Psest_0585at 635.861 kb on + strand, within Psest_0585at 635.861 kb on + strand, within Psest_0585at 635.861 kb on + strand, within Psest_0585at 635.862 kb on - strand, within Psest_0585at 635.862 kb on - strand, within Psest_0585at 635.862 kb on - strand, within Psest_0585at 635.862 kb on - strand, within Psest_0585at 635.862 kb on - strand, within Psest_0585at 635.898 kb on - strand, within Psest_0585at 635.942 kb on - strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.990 kb on + strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 635.991 kb on - strand, within Psest_0585at 636.007 kb on - strand, within Psest_0585at 636.007 kb on - strand, within Psest_0585at 636.007 kb on - strand, within Psest_0585at 636.007 kb on - strand, within Psest_0585at 636.007 kb on - strand, within Psest_0585at 636.007 kb on - strand, within Psest_0585at 636.028 kb on + strand, within Psest_0585at 636.028 kb on + strand, within Psest_0585at 636.029 kb on - strand, within Psest_0585at 636.029 kb on - strand, within Psest_0585at 636.029 kb on - strand, within Psest_0585at 636.029 kb on - strand, within Psest_0585at 636.029 kb on - strand, within Psest_0585at 636.029 kb on - strand, within Psest_0585at 636.062 kb on + strand, within Psest_0585at 636.063 kb on - strand, within Psest_0585at 636.063 kb on - strand, within Psest_0585at 636.063 kb on - strand, within Psest_0585at 636.083 kb on + strand, within Psest_0585at 636.083 kb on + strand, within Psest_0585at 636.084 kb on - strand, within Psest_0585at 636.084 kb on - strand, within Psest_0585at 636.084 kb on - strand, within Psest_0585at 636.214 kb on + strand, within Psest_0585at 636.236 kb on + strand, within Psest_0585at 636.236 kb on + strand, within Psest_0585at 636.236 kb on + strand, within Psest_0585at 636.237 kb on - strand, within Psest_0585at 636.291 kb on + strand, within Psest_0585at 636.291 kb on + strand, within Psest_0585at 636.291 kb on + strand, within Psest_0585at 636.292 kb on - strand, within Psest_0585at 636.294 kb on - strand, within Psest_0585at 636.449 kb on - strand, within Psest_0585at 636.519 kb on + strand, within Psest_0585at 636.519 kb on + strand, within Psest_0585at 636.519 kb on + strand, within Psest_0585at 636.519 kb on + strand, within Psest_0585at 636.519 kb on + strand, within Psest_0585at 636.519 kb on + strand, within Psest_0585at 636.520 kb on - strand, within Psest_0585at 636.520 kb on - strand, within Psest_0585at 636.554 kb on + strandat 636.589 kb on + strandat 636.589 kb on + strandat 636.589 kb on + strandat 636.589 kb on + strandat 636.590 kb on - strandat 636.590 kb on - strandat 636.590 kb on - strandat 636.631 kb on - strandat 636.639 kb on + strandat 636.639 kb on + strandat 636.640 kb on - strandat 636.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3
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634,365 + Psest_0583 0.48 -1.2
634,366 - Psest_0583 0.48 -0.7
634,366 - Psest_0583 0.48 -0.8
634,385 + Psest_0583 0.49 -0.2
634,385 + Psest_0583 0.49 -0.9
634,385 + Psest_0583 0.49 -1.5
634,385 + Psest_0583 0.49 -0.7
634,385 + Psest_0583 0.49 +1.0
634,386 - Psest_0583 0.49 -2.1
634,386 - Psest_0583 0.49 +0.6
634,436 + Psest_0583 0.51 -0.3
634,436 + Psest_0583 0.51 +0.7
634,436 + Psest_0583 0.51 +0.5
634,436 + Psest_0583 0.51 -0.5
634,436 + Psest_0583 0.51 -1.9
634,436 + Psest_0583 0.51 -0.3
634,437 - Psest_0583 0.52 +4.5
634,437 - Psest_0583 0.52 -0.7
634,437 - Psest_0583 0.52 -1.3
634,437 - Psest_0583 0.52 -0.3
634,437 - Psest_0583 0.52 -0.1
634,437 - Psest_0583 0.52 +0.3
634,472 + Psest_0583 0.53 +0.3
634,473 - Psest_0583 0.53 +1.3
634,473 - Psest_0583 0.53 -0.8
634,509 - Psest_0583 0.55 -1.4
634,669 + Psest_0583 0.64 -0.5
634,670 - Psest_0583 0.64 -0.9
634,804 + Psest_0583 0.71 -0.3
634,804 + Psest_0583 0.71 -1.4
634,804 + Psest_0583 0.71 -0.1
634,804 + Psest_0583 0.71 +0.4
634,804 + Psest_0583 0.71 -1.4
634,835 - Psest_0583 0.73 +1.7
634,873 + Psest_0583 0.75 +1.0
634,900 - Psest_0583 0.77 -0.5
634,928 + Psest_0583 0.78 -0.4
634,928 + Psest_0583 0.78 -0.5
634,928 + Psest_0583 0.78 -0.3
634,928 + Psest_0583 0.78 +0.3
634,928 + Psest_0583 0.78 -0.5
634,929 - Psest_0583 0.78 -1.3
634,929 - Psest_0583 0.78 +0.4
634,929 - Psest_0583 0.78 -2.6
634,929 - Psest_0583 0.78 +0.2
634,929 - Psest_0583 0.78 -0.7
634,929 - Psest_0583 0.78 -1.4
634,929 - Psest_0583 0.78 -1.5
634,929 - Psest_0583 0.78 -0.3
634,929 - Psest_0583 0.78 -0.8
634,931 - Psest_0583 0.78 -1.1
635,040 + Psest_0583 0.84 +0.5
635,040 + Psest_0583 0.84 -0.3
635,040 + Psest_0583 0.84 -2.6
635,040 + Psest_0583 0.84 -1.5
635,040 + Psest_0583 0.84 -0.1
635,040 + Psest_0583 0.84 -1.7
635,040 + Psest_0583 0.84 +0.7
635,040 + Psest_0583 0.84 -0.9
635,040 + Psest_0583 0.84 -0.5
635,040 + Psest_0583 0.84 -1.0
635,040 - Psest_0583 0.84 -1.4
635,041 - Psest_0583 0.84 +1.1
635,041 - Psest_0583 0.84 +0.0
635,041 - Psest_0583 0.84 -1.8
635,041 - Psest_0583 0.84 +0.7
635,041 - Psest_0583 0.84 -1.6
635,041 - Psest_0583 0.84 -1.7
635,041 - Psest_0583 0.84 -0.8
635,041 - Psest_0583 0.84 -0.4
635,075 + Psest_0583 0.86 -0.5
635,075 + Psest_0583 0.86 -0.9
635,075 + Psest_0583 0.86 -0.7
635,076 - Psest_0583 0.86 -0.5
635,143 + Psest_0583 0.90 -1.4
635,143 + Psest_0583 0.90 +1.5
635,143 + Psest_0583 0.90 +1.1
635,144 - Psest_0583 0.90 -0.6
635,144 - Psest_0583 0.90 +0.7
635,144 - Psest_0583 0.90 +1.9
635,144 - Psest_0583 0.90 +1.6
635,144 - Psest_0583 0.90 -0.9
635,144 - Psest_0583 0.90 -1.1
635,144 - Psest_0583 0.90 -1.1
635,144 - Psest_0583 0.90 -0.4
635,144 - Psest_0583 0.90 +0.3
635,264 + -1.9
635,264 + -0.6
635,265 - -0.5
635,265 - -0.3
635,277 + -1.3
635,277 + +0.7
635,278 - -0.1
635,278 - +0.4
635,278 - -0.4
635,327 + -0.9
635,328 - -1.0
635,328 - +1.7
635,339 + -0.9
635,339 + -1.4
635,339 + +0.7
635,339 + -0.6
635,339 + +1.4
635,340 - -0.7
635,340 - -0.0
635,340 - -0.8
635,340 - -1.4
635,362 + -0.7
635,362 + -1.8
635,362 + -1.0
635,362 + +1.8
635,413 + Psest_0584 0.23 -1.2
635,413 + Psest_0584 0.23 -0.1
635,413 + Psest_0584 0.23 -1.3
635,413 + Psest_0584 0.23 -1.4
635,413 + Psest_0584 0.23 -0.3
635,413 + Psest_0584 0.23 -1.2
635,413 + Psest_0584 0.23 -1.8
635,413 + Psest_0584 0.23 -0.6
635,413 + Psest_0584 0.23 +0.4
635,414 - Psest_0584 0.24 +0.4
635,414 - Psest_0584 0.24 -0.2
635,414 - Psest_0584 0.24 -2.6
635,414 - Psest_0584 0.24 +0.4
635,414 - Psest_0584 0.24 -1.9
635,518 + Psest_0584 0.58 +0.3
635,519 - Psest_0584 0.58 -0.6
635,614 + -0.5
635,615 - -0.6
635,615 - +0.6
635,642 + -2.4
635,798 + Psest_0585 0.16 +0.6
635,799 - Psest_0585 0.17 -0.3
635,861 + Psest_0585 0.23 -0.8
635,861 + Psest_0585 0.23 +0.7
635,861 + Psest_0585 0.23 +0.7
635,861 + Psest_0585 0.23 -1.2
635,861 + Psest_0585 0.23 -0.1
635,862 - Psest_0585 0.23 -1.3
635,862 - Psest_0585 0.23 -2.6
635,862 - Psest_0585 0.23 +0.8
635,862 - Psest_0585 0.23 -1.3
635,862 - Psest_0585 0.23 -0.6
635,898 - Psest_0585 0.26 -0.3
635,942 - Psest_0585 0.31 -0.2
635,990 + Psest_0585 0.36 -2.0
635,990 + Psest_0585 0.36 -0.7
635,990 + Psest_0585 0.36 +0.2
635,990 + Psest_0585 0.36 +0.7
635,990 + Psest_0585 0.36 -2.3
635,990 + Psest_0585 0.36 +1.3
635,990 + Psest_0585 0.36 +0.3
635,990 + Psest_0585 0.36 -0.2
635,991 - Psest_0585 0.36 -0.4
635,991 - Psest_0585 0.36 +0.6
635,991 - Psest_0585 0.36 -1.5
635,991 - Psest_0585 0.36 -0.7
635,991 - Psest_0585 0.36 +0.7
635,991 - Psest_0585 0.36 -1.0
635,991 - Psest_0585 0.36 -0.6
636,007 - Psest_0585 0.37 +1.3
636,007 - Psest_0585 0.37 -1.6
636,007 - Psest_0585 0.37 +0.8
636,007 - Psest_0585 0.37 -0.2
636,007 - Psest_0585 0.37 -0.2
636,007 - Psest_0585 0.37 +1.5
636,028 + Psest_0585 0.39 -0.5
636,028 + Psest_0585 0.39 -0.7
636,029 - Psest_0585 0.40 +2.9
636,029 - Psest_0585 0.40 +0.2
636,029 - Psest_0585 0.40 -0.3
636,029 - Psest_0585 0.40 +2.0
636,029 - Psest_0585 0.40 -0.3
636,029 - Psest_0585 0.40 -0.8
636,062 + Psest_0585 0.43 -0.0
636,063 - Psest_0585 0.43 -0.3
636,063 - Psest_0585 0.43 +3.7
636,063 - Psest_0585 0.43 +1.1
636,083 + Psest_0585 0.45 -0.1
636,083 + Psest_0585 0.45 +0.7
636,084 - Psest_0585 0.45 -0.1
636,084 - Psest_0585 0.45 -0.1
636,084 - Psest_0585 0.45 +0.4
636,214 + Psest_0585 0.58 -1.1
636,236 + Psest_0585 0.60 -1.3
636,236 + Psest_0585 0.60 -0.9
636,236 + Psest_0585 0.60 -0.9
636,237 - Psest_0585 0.60 -0.5
636,291 + Psest_0585 0.66 +0.1
636,291 + Psest_0585 0.66 +0.3
636,291 + Psest_0585 0.66 -0.6
636,292 - Psest_0585 0.66 -2.1
636,294 - Psest_0585 0.66 -2.1
636,449 - Psest_0585 0.82 -0.4
636,519 + Psest_0585 0.89 +0.7
636,519 + Psest_0585 0.89 -0.7
636,519 + Psest_0585 0.89 -2.6
636,519 + Psest_0585 0.89 -0.3
636,519 + Psest_0585 0.89 -2.2
636,519 + Psest_0585 0.89 -0.3
636,520 - Psest_0585 0.89 +0.0
636,520 - Psest_0585 0.89 -0.6
636,554 + -0.6
636,589 + +1.0
636,589 + -1.4
636,589 + -0.7
636,589 + +2.4
636,590 - -0.6
636,590 - +0.0
636,590 - +0.6
636,631 - -2.9
636,639 + -1.7
636,639 + -0.2
636,640 - -1.5
636,640 - -2.2

Or see this region's nucleotide sequence