Experiment: Lactate-nitrate; anaerobic; nickel stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0571 and Psest_0573 are separated by 544 nucleotides Psest_0573 and Psest_0574 are separated by 25 nucleotides Psest_0574 and Psest_0575 are separated by 156 nucleotides
Psest_0571: Psest_0571 - Transcriptional regulators, at 626,607 to 627,086
_0571
Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521
_0573
Psest_0574: Psest_0574 - hypothetical protein, at 628,547 to 628,963
_0574
Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584
_0575
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.764 kb on + strand, within Psest_0571 at 626.765 kb on - strand, within Psest_0571 at 626.881 kb on + strand, within Psest_0571 at 626.939 kb on + strand, within Psest_0571 at 626.940 kb on - strand, within Psest_0571 at 626.940 kb on - strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.941 kb on + strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 626.942 kb on - strand, within Psest_0571 at 627.129 kb on - strand at 627.131 kb on + strand at 627.157 kb on + strand at 627.157 kb on + strand at 627.206 kb on + strand at 627.207 kb on - strand at 627.207 kb on - strand at 627.274 kb on + strand at 627.360 kb on + strand at 627.360 kb on + strand at 627.361 kb on - strand at 627.528 kb on + strand at 627.529 kb on - strand at 627.529 kb on - strand at 627.804 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 628.055 kb on + strand, within Psest_0573 at 628.115 kb on + strand, within Psest_0573 at 628.116 kb on - strand, within Psest_0573 at 628.492 kb on - strand at 628.533 kb on - strand at 628.731 kb on + strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.749 kb on + strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.957 kb on + strand at 628.957 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.130 kb on + strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.135 kb on - strand at 629.135 kb on - strand at 629.508 kb on + strand, within Psest_0575
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3 remove 626,764 + Psest_0571 0.33 -0.9 626,765 - Psest_0571 0.33 -0.1 626,881 + Psest_0571 0.57 -0.5 626,939 + Psest_0571 0.69 -0.9 626,940 - Psest_0571 0.69 -1.0 626,940 - Psest_0571 0.69 +0.7 626,941 + Psest_0571 0.70 +0.2 626,941 + Psest_0571 0.70 -0.0 626,941 + -1.3 626,941 + Psest_0571 0.70 -0.6 626,941 + Psest_0571 0.70 +0.2 626,941 + Psest_0571 0.70 +0.3 626,941 + Psest_0571 0.70 +0.1 626,941 + Psest_0571 0.70 +0.4 626,942 - Psest_0571 0.70 +0.2 626,942 - Psest_0571 0.70 -0.1 626,942 - Psest_0571 0.70 +0.5 626,942 - Psest_0571 0.70 +1.4 626,942 - Psest_0571 0.70 +0.1 627,129 - -0.2 627,131 + +0.6 627,157 + +1.0 627,157 + -0.5 627,206 + -1.5 627,207 - -1.4 627,207 - -0.2 627,274 + +2.3 627,360 + -1.3 627,360 + +0.3 627,361 - -0.2 627,528 + -0.6 627,529 - -0.0 627,529 - -1.0 627,804 + Psest_0573 0.19 -1.6 627,950 + Psest_0573 0.36 -1.7 627,950 + Psest_0573 0.36 +1.0 627,950 + Psest_0573 0.36 -0.3 627,950 + Psest_0573 0.36 -0.3 627,950 + Psest_0573 0.36 -1.5 627,950 + Psest_0573 0.36 +1.4 627,951 - Psest_0573 0.36 -1.3 627,951 - Psest_0573 0.36 -1.8 627,951 - Psest_0573 0.36 -0.2 627,951 - Psest_0573 0.36 -2.5 627,951 - Psest_0573 0.36 -1.2 627,951 - Psest_0573 0.36 +0.0 627,951 - Psest_0573 0.36 -0.8 628,055 + Psest_0573 0.48 -1.3 628,115 + Psest_0573 0.54 -1.1 628,116 - Psest_0573 0.54 -1.6 628,492 - -0.8 628,533 - +1.4 628,731 + Psest_0574 0.44 -2.3 628,732 - Psest_0574 0.44 -0.4 628,732 - Psest_0574 0.44 -0.0 628,749 + Psest_0574 0.48 -1.5 628,750 - Psest_0574 0.49 -0.6 628,750 - Psest_0574 0.49 +0.5 628,750 - Psest_0574 0.49 -1.0 628,750 - Psest_0574 0.49 -0.1 628,750 - Psest_0574 0.49 -0.9 628,803 + Psest_0574 0.61 -1.5 628,803 + Psest_0574 0.61 -1.8 628,803 + Psest_0574 0.61 -1.6 628,803 + Psest_0574 0.61 +0.1 628,803 + Psest_0574 0.61 -2.6 628,804 - Psest_0574 0.62 +2.4 628,804 - Psest_0574 0.62 -1.3 628,804 - Psest_0574 0.62 -0.6 628,804 - Psest_0574 0.62 +0.3 628,804 - Psest_0574 0.62 +0.9 628,804 - Psest_0574 0.62 -1.1 628,804 - Psest_0574 0.62 -0.3 628,804 - Psest_0574 0.62 +0.9 628,804 - Psest_0574 0.62 +0.7 628,804 - Psest_0574 0.62 -1.0 628,804 - Psest_0574 0.62 -1.4 628,804 - Psest_0574 0.62 +0.4 628,836 - Psest_0574 0.69 +0.2 628,836 - Psest_0574 0.69 +0.4 628,957 + -1.6 628,957 + -1.5 628,992 + -1.9 628,992 + +0.8 628,992 + +0.7 628,992 + -1.1 628,992 + -0.4 628,992 + -0.3 628,992 + -0.1 628,992 + -2.4 628,992 + -0.3 628,992 + +0.1 628,992 + +1.4 628,992 + +0.4 628,992 + -0.8 628,992 + +0.1 628,992 + -0.3 628,992 + -0.1 628,992 + -0.9 628,992 + -0.3 628,993 - -0.1 628,993 - -1.2 628,993 - +0.5 628,993 - +1.4 628,993 - -0.5 628,993 - +2.0 628,993 - -0.9 628,993 - +1.8 628,993 - -0.8 628,994 + -1.7 628,994 + -2.1 628,994 + +1.5 628,994 + -0.2 628,994 + +0.2 628,994 + -1.5 628,994 + -0.7 628,994 + -0.3 628,994 + +0.0 628,994 + -3.4 628,994 + -1.6 628,994 + +1.8 628,994 + -0.3 628,994 + -0.6 628,994 + -0.5 628,994 + -0.8 628,994 + -0.1 628,994 + -0.8 628,994 + -0.9 628,994 + -0.3 628,994 + -1.3 628,995 - -2.1 628,995 - +0.4 628,995 - -1.8 628,995 - -0.9 628,995 - +0.6 628,995 - +1.1 628,995 - -0.4 628,995 - +0.3 628,995 - -0.0 628,995 - +1.0 628,995 - -0.3 628,995 - -0.3 628,995 - -0.7 628,995 - -2.3 628,995 - -0.1 628,995 - +0.1 628,995 - +0.9 628,995 - -1.1 628,995 - +0.7 628,995 - -0.3 628,995 - +1.5 628,995 - -0.5 628,995 - +0.7 628,995 - +0.5 628,995 - +0.4 628,995 - -1.9 628,995 - +0.7 628,995 - +0.6 628,995 - -0.3 628,995 - +1.0 628,995 - -0.6 628,995 - +0.0 628,995 - +1.3 629,092 - -0.2 629,092 - +1.3 629,092 - -0.3 629,094 - -0.5 629,094 - -1.2 629,094 - +0.3 629,094 - -0.7 629,094 - -1.1 629,130 + -1.0 629,131 - +0.3 629,131 - -0.6 629,131 - -0.3 629,131 - +1.6 629,135 - +0.6 629,135 - -0.2 629,508 + Psest_0575 0.83 +0.1
Or see this region's nucleotide sequence