Experiment: Lactate-nitrate; anaerobic; nickel stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0548 and Psest_0549 are separated by 163 nucleotides Psest_0549 and Psest_0550 are separated by 247 nucleotides Psest_0550 and Psest_0551 are separated by 100 nucleotides
Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818
_0548
Psest_0549: Psest_0549 - Predicted acetyltransferase, at 602,982 to 603,485
_0549
Psest_0550: Psest_0550 - Predicted permease, DMT superfamily, at 603,733 to 604,605
_0550
Psest_0551: Psest_0551 - PEP phosphonomutase and related enzymes, at 604,706 to 605,569
_0551
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 602.754 kb on + strand, within Psest_0548 at 602.754 kb on + strand, within Psest_0548 at 602.755 kb on - strand, within Psest_0548 at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.945 kb on + strand at 602.945 kb on + strand at 602.946 kb on - strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.025 kb on + strand at 603.026 kb on - strand at 603.164 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.453 kb on - strand at 603.481 kb on + strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.544 kb on + strand at 603.757 kb on + strand at 603.758 kb on - strand at 603.774 kb on - strand at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.223 kb on - strand, within Psest_0550 at 604.266 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.456 kb on + strand, within Psest_0550 at 604.489 kb on + strand, within Psest_0550 at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.705 kb on + strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.900 kb on + strand, within Psest_0551 at 604.900 kb on + strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.933 kb on + strand, within Psest_0551 at 605.339 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.510 kb on + strand at 605.510 kb on + strand at 605.510 kb on + strand at 605.511 kb on - strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.567 kb on + strand at 605.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3 remove 602,754 + Psest_0548 0.87 +1.9 602,754 + Psest_0548 0.87 +1.0 602,755 - Psest_0548 0.87 +0.7 602,880 + +0.3 602,880 + -1.1 602,880 + -1.2 602,880 + -0.2 602,880 + +0.3 602,880 + +1.5 602,880 + +1.0 602,880 + +2.2 602,880 + -2.6 602,881 - +1.1 602,881 - -0.1 602,881 - +0.3 602,881 - +0.0 602,881 - +0.3 602,881 - +0.0 602,881 - +0.4 602,881 - +0.3 602,881 - +0.7 602,883 - +0.5 602,883 - +1.5 602,883 - +0.4 602,945 + +0.1 602,945 + +0.2 602,946 - +1.5 603,007 + +0.7 603,007 + +0.4 603,007 + +0.7 603,007 + -1.1 603,007 + -0.2 603,007 + -2.6 603,007 + +2.0 603,007 + -0.5 603,007 + +0.1 603,007 + +0.6 603,007 + -0.8 603,007 + +1.0 603,007 + -1.0 603,007 + +0.3 603,025 + -0.8 603,026 - -0.0 603,164 + Psest_0549 0.36 +2.0 603,316 + Psest_0549 0.66 +0.1 603,316 + Psest_0549 0.66 -0.2 603,316 + Psest_0549 0.66 +0.7 603,316 + Psest_0549 0.66 -1.3 603,418 + Psest_0549 0.87 -0.7 603,418 + Psest_0549 0.87 -0.4 603,418 + Psest_0549 0.87 +0.6 603,418 + Psest_0549 0.87 +0.2 603,418 + Psest_0549 0.87 +0.4 603,419 - Psest_0549 0.87 +1.3 603,419 - Psest_0549 0.87 +1.8 603,453 - -0.7 603,481 + +0.1 603,482 - +1.3 603,482 - +0.7 603,482 - -1.2 603,544 + -0.7 603,757 + +0.7 603,758 - +0.6 603,774 - -0.2 603,866 - Psest_0550 0.15 -0.4 603,866 - Psest_0550 0.15 +0.1 603,866 - Psest_0550 0.15 +1.9 604,222 + Psest_0550 0.56 +1.2 604,222 + Psest_0550 0.56 +0.7 604,222 + Psest_0550 0.56 -1.9 604,223 - Psest_0550 0.56 +0.1 604,266 + Psest_0550 0.61 +0.3 604,276 + Psest_0550 0.62 +0.5 604,276 + Psest_0550 0.62 +0.7 604,276 + Psest_0550 0.62 +1.5 604,276 + Psest_0550 0.62 -0.3 604,276 + Psest_0550 0.62 +0.0 604,276 + Psest_0550 0.62 +1.2 604,276 + Psest_0550 0.62 -0.1 604,277 - Psest_0550 0.62 +1.0 604,277 - Psest_0550 0.62 +0.7 604,277 - Psest_0550 0.62 +1.7 604,277 - Psest_0550 0.62 -0.3 604,277 - Psest_0550 0.62 +0.1 604,277 - Psest_0550 0.62 -0.4 604,277 - Psest_0550 0.62 +1.4 604,277 - Psest_0550 0.62 +2.8 604,456 + Psest_0550 0.83 +0.5 604,489 + Psest_0550 0.87 -1.3 604,570 + +0.7 604,570 + +0.2 604,570 + +1.4 604,570 + -0.5 604,570 + +0.6 604,570 + -2.8 604,570 + +0.6 604,570 + -0.3 604,571 - +2.7 604,571 - -0.9 604,571 - +1.1 604,571 - +0.1 604,571 - +0.4 604,571 - -0.0 604,703 + +0.3 604,703 + -0.4 604,703 + +1.2 604,703 + +1.2 604,703 + +1.7 604,703 + +0.2 604,703 + -0.3 604,703 + -0.2 604,703 + +0.2 604,703 + -1.7 604,703 + -0.3 604,703 + -0.9 604,703 + +2.8 604,703 + +0.1 604,704 - +1.7 604,704 - +0.5 604,704 - -3.2 604,704 - -0.3 604,704 - +1.0 604,704 - -0.8 604,704 - -2.0 604,704 - +1.3 604,705 + +0.7 604,706 - +0.7 604,706 - +2.2 604,706 - -1.5 604,900 + Psest_0551 0.22 -1.0 604,900 + Psest_0551 0.22 -1.3 604,901 - Psest_0551 0.23 -0.4 604,901 - Psest_0551 0.23 +0.4 604,933 + Psest_0551 0.26 +0.9 605,339 + Psest_0551 0.73 +1.6 605,417 + Psest_0551 0.82 +0.7 605,417 + Psest_0551 0.82 -1.6 605,418 - Psest_0551 0.82 -0.3 605,418 - Psest_0551 0.82 +0.3 605,418 - Psest_0551 0.82 +1.3 605,441 + Psest_0551 0.85 -0.6 605,441 + Psest_0551 0.85 -0.2 605,441 + Psest_0551 0.85 -0.0 605,441 + Psest_0551 0.85 -0.3 605,442 - Psest_0551 0.85 +0.0 605,442 - Psest_0551 0.85 -0.7 605,510 + -0.9 605,510 + +1.7 605,510 + +2.0 605,511 - -0.2 605,528 + +1.1 605,528 + +0.3 605,528 + +1.4 605,528 + +0.9 605,528 + +0.1 605,529 - -0.1 605,529 - +0.9 605,529 - +0.3 605,529 - -0.9 605,529 - +1.3 605,549 + +0.1 605,549 + +1.0 605,549 + +0.3 605,549 + -0.3 605,549 + -0.2 605,549 + -0.7 605,550 - -0.9 605,550 - +0.9 605,550 - -1.3 605,567 + -0.7 605,568 - +2.9
Or see this region's nucleotide sequence