Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3487

Experiment: Lactate-nitrate; anaerobic; nickel stress sample3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lactate-nitrate; anaerobic; nickel stress sample3
3,658,420	-		Psest_3486	0.77	-3.3
3,658,455	+		Psest_3486	0.78	-3.8
3,658,527	+		Psest_3486	0.80	-1.4
3,658,527	+		Psest_3486	0.80	-2.0
3,658,527	+		Psest_3486	0.80	-1.0
3,658,527	+		Psest_3486	0.80	-2.4
3,658,527	+		Psest_3486	0.80	-3.9
3,658,527	+		Psest_3486	0.80	-2.2
3,658,528	-		Psest_3486	0.80	-2.2
3,658,528	-		Psest_3486	0.80	-2.3
3,658,528	-		Psest_3486	0.80	-2.3
3,658,528	-		Psest_3486	0.80	-2.1
3,658,528	-		Psest_3486	0.80	-0.4
3,658,528	-		Psest_3486	0.80	-3.0
3,658,539	+		Psest_3486	0.81	-0.4
3,658,539	+		Psest_3486	0.81	-1.4
3,658,540	-		Psest_3486	0.81	-0.4
3,658,540	-		Psest_3486	0.81	-2.2
3,658,611	+		Psest_3486	0.82	+1.6
3,658,611	+		Psest_3486	0.82	-3.8
3,658,612	-		Psest_3486	0.82	-1.4
3,658,620	+		Psest_3486	0.83	-0.7
3,658,621	-		Psest_3486	0.83	-1.7
3,658,674	+		Psest_3486	0.84	-2.6
3,658,732	-		Psest_3486	0.86	-3.5
3,658,732	-		Psest_3486	0.86	-2.3
3,658,747	-		Psest_3486	0.86	-1.0
3,658,747	-		Psest_3486	0.86	-2.9
3,658,827	+		Psest_3486	0.88	-2.3
3,658,827	+		Psest_3486	0.88	+0.2
3,658,827	+		Psest_3486	0.88	-2.3
3,658,828	-		Psest_3486	0.88	-2.8
3,658,828	-		Psest_3486	0.88	-4.3
3,658,959	+				-3.2
3,658,959	+				-2.0
3,658,960	-				-2.7
3,658,960	-				-1.3
3,658,960	-				-1.9
3,658,965	+				-3.6
3,658,965	+				+1.6
3,658,965	+				-2.2
3,658,965	+				-1.0
3,658,966	-				-3.6
3,658,966	-				-2.5
3,658,974	+				-3.4
3,658,974	+				+1.6
3,658,974	+				-2.0
3,658,974	+				-0.4
3,658,974	+				-2.0
3,658,975	-				-0.4
3,659,082	+				-0.4
3,659,082	+				-3.0
3,659,082	+				-1.7
3,659,082	+				-1.7
3,659,083	-				-0.1
3,659,146	-				+0.6
3,659,163	+				-0.4
3,659,321	-				-1.1
3,659,425	+				-3.6
3,659,425	+				-2.2
3,659,425	+				-2.1
3,659,425	+				-3.2
3,659,425	+				-2.0
3,659,426	-				+2.1
3,659,426	-				+0.3
3,659,426	-				+1.7
3,659,426	-				+1.3
3,659,426	-				-1.0
3,659,426	-				+0.4
3,659,426	-				-1.4
3,659,426	-				-1.9
3,659,426	-				+0.0
3,659,426	-				+0.1
3,659,426	-				+0.3
3,659,426	-				+2.6
3,659,426	-				+0.2
3,659,428	+				-1.2
3,659,428	+				-2.0
3,659,429	-				+0.2
3,659,429	-				-0.4
3,659,555	-		Psest_3487	0.12	+2.2
3,659,555	-		Psest_3487	0.12	+0.4
3,659,767	+		Psest_3487	0.26	-2.5
3,659,767	+		Psest_3487	0.26	-2.8
3,659,767	+		Psest_3487	0.26	-1.6
3,659,767	+		Psest_3487	0.26	-1.5
3,659,767	+		Psest_3487	0.26	-3.6
3,659,767	+		Psest_3487	0.26	-1.9
3,659,767	+		Psest_3487	0.26	-1.2
3,659,767	+		Psest_3487	0.26	-2.6
3,659,767	+		Psest_3487	0.26	+1.0
3,659,767	+		Psest_3487	0.26	-3.7
3,659,767	+		Psest_3487	0.26	+0.6
3,659,768	-		Psest_3487	0.27	-0.4
3,659,768	-		Psest_3487	0.27	+2.9
3,659,768	-		Psest_3487	0.27	-0.5
3,659,768	-		Psest_3487	0.27	+0.6
3,659,768	-		Psest_3487	0.27	+1.6
3,659,768	-		Psest_3487	0.27	-0.4
3,659,768	-		Psest_3487	0.27	+2.6
3,659,768	-		Psest_3487	0.27	+0.6
3,659,768	-		Psest_3487	0.27	-0.4
3,659,959	+		Psest_3487	0.39	-2.7
3,659,959	+		Psest_3487	0.39	-1.4
3,659,959	+		Psest_3487	0.39	-0.7
3,659,959	+		Psest_3487	0.39	-0.9
3,659,960	-		Psest_3487	0.39	-1.2
3,659,960	-		Psest_3487	0.39	+1.9
3,659,960	-		Psest_3487	0.39	+1.6
3,659,979	+		Psest_3487	0.41	+0.0
3,659,979	+		Psest_3487	0.41	-2.0
3,659,980	-		Psest_3487	0.41	+0.6
3,659,980	-		Psest_3487	0.41	-1.1
3,659,995	+		Psest_3487	0.42	-2.3
3,659,995	+		Psest_3487	0.42	-1.4
3,659,996	-		Psest_3487	0.42	-1.7
3,659,996	-		Psest_3487	0.42	-1.3
3,660,289	+		Psest_3487	0.62	-2.3
3,660,292	+		Psest_3487	0.62	-2.1
3,660,292	+		Psest_3487	0.62	-2.7
3,660,292	+		Psest_3487	0.62	-2.5
3,660,292	+		Psest_3487	0.62	-1.1
3,660,292	+		Psest_3487	0.62	-0.4
3,660,430	+		Psest_3487	0.71	-1.4
3,660,431	-		Psest_3487	0.71	-3.5
3,660,431	-		Psest_3487	0.71	+2.4
3,660,431	-		Psest_3487	0.71	+0.0
3,660,787	+				-2.2
3,660,787	+				-2.8
3,660,787	+				-2.9
3,660,787	+				-2.1
3,660,787	+				-3.3
3,660,787	+				-2.0
3,660,787	+				-3.1
3,660,788	-				-2.1
3,660,788	-				-0.7
3,660,788	-				-1.2
3,660,788	-				+0.2
3,660,788	-				-2.1
3,660,788	-				-1.7
3,660,788	-				-0.1
3,660,788	-				-1.4
3,660,848	+				-2.2
3,660,848	+				-1.5
3,660,848	+				-1.3
3,660,849	-				-4.5
3,660,951	+		Psest_3488	0.17	+0.6
3,660,951	+		Psest_3488	0.17	-3.0
3,660,951	+		Psest_3488	0.17	-4.3
3,660,951	+		Psest_3488	0.17	-2.1
3,660,951	+		Psest_3488	0.17	-2.7
3,660,951	+		Psest_3488	0.17	-0.4
3,660,951	+		Psest_3488	0.17	-1.0
3,660,952	-		Psest_3488	0.17	+3.6
3,660,952	-		Psest_3488	0.17	+1.0
3,661,315	-				-2.9
3,661,366	-				-2.7
3,661,366	-				-0.2
3,661,383	+				+0.6
3,661,383	+				-1.6
3,661,383	+				-1.9
3,661,384	-				-1.7
3,661,384	-				-3.0
3,661,384	-				-1.4
3,661,384	-				-1.8
3,661,416	+				-1.7
3,661,435	-				-2.8
3,661,557	+		Psest_3489	0.13	-3.6
3,661,557	+		Psest_3489	0.13	-2.6
3,661,558	-		Psest_3489	0.13	-0.4
3,661,558	-		Psest_3489	0.13	-1.7
3,661,558	-		Psest_3489	0.13	-1.5
3,661,558	-		Psest_3489	0.13	-0.7
3,661,647	+		Psest_3489	0.19	-1.2
3,661,647	+		Psest_3489	0.19	-2.4
3,661,647	+		Psest_3489	0.19	-3.6
3,661,647	+		Psest_3489	0.19	+0.0
3,661,648	-		Psest_3489	0.19	-2.1
3,661,648	-		Psest_3489	0.19	+0.6
3,661,648	-		Psest_3489	0.19	-1.0
3,661,671	+		Psest_3489	0.20	-2.2
3,661,690	-		Psest_3489	0.21	-1.0
3,661,821	+		Psest_3489	0.29	-2.2
3,661,821	+		Psest_3489	0.29	-3.0
3,661,822	-		Psest_3489	0.30	-0.7