Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1190

Experiment: Lactate-nitrate; anaerobic; nickel stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1188 and Psest_1189 are separated by 122 nucleotidesPsest_1189 and Psest_1190 are separated by 68 nucleotidesPsest_1190 and Psest_1191 are separated by 78 nucleotides Psest_1188: Psest_1188 - FOG: EAL domain, at 1,290,323 to 1,291,573 _1188 Psest_1189: Psest_1189 - conserved hypothetical protein, at 1,291,696 to 1,292,148 _1189 Psest_1190: Psest_1190 - Transcriptional regulator, at 1,292,217 to 1,292,885 _1190 Psest_1191: Psest_1191 - Nucleoside-binding outer membrane protein, at 1,292,964 to 1,293,776 _1191 Position (kb) 1292 1293Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1291.524 kb on - strandat 1291.690 kb on + strandat 1291.690 kb on + strandat 1291.736 kb on + strandat 1291.737 kb on - strandat 1292.080 kb on + strand, within Psest_1189at 1292.081 kb on - strand, within Psest_1189at 1292.356 kb on + strand, within Psest_1190at 1292.356 kb on + strand, within Psest_1190at 1292.356 kb on + strand, within Psest_1190at 1292.357 kb on - strand, within Psest_1190at 1292.584 kb on + strand, within Psest_1190at 1292.584 kb on + strand, within Psest_1190at 1292.585 kb on - strand, within Psest_1190at 1292.585 kb on - strand, within Psest_1190at 1292.701 kb on + strand, within Psest_1190at 1292.701 kb on + strand, within Psest_1190at 1292.701 kb on + strand, within Psest_1190at 1292.701 kb on + strand, within Psest_1190at 1292.701 kb on + strand, within Psest_1190at 1292.702 kb on - strand, within Psest_1190at 1292.704 kb on + strand, within Psest_1190at 1292.704 kb on + strand, within Psest_1190at 1292.704 kb on + strand, within Psest_1190at 1292.704 kb on + strand, within Psest_1190at 1292.704 kb on + strand, within Psest_1190at 1292.704 kb on + strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.705 kb on - strand, within Psest_1190at 1292.707 kb on + strand, within Psest_1190at 1292.707 kb on + strand, within Psest_1190at 1292.707 kb on + strand, within Psest_1190at 1292.707 kb on + strand, within Psest_1190at 1292.708 kb on - strand, within Psest_1190at 1292.708 kb on - strand, within Psest_1190at 1292.888 kb on + strandat 1292.889 kb on - strandat 1292.889 kb on - strandat 1292.966 kb on - strandat 1293.035 kb on - strandat 1293.055 kb on + strand, within Psest_1191at 1293.055 kb on + strand, within Psest_1191at 1293.055 kb on + strand, within Psest_1191at 1293.076 kb on + strand, within Psest_1191at 1293.076 kb on + strand, within Psest_1191at 1293.077 kb on - strand, within Psest_1191at 1293.091 kb on + strand, within Psest_1191at 1293.091 kb on + strand, within Psest_1191at 1293.091 kb on + strand, within Psest_1191at 1293.091 kb on + strand, within Psest_1191at 1293.092 kb on - strand, within Psest_1191at 1293.092 kb on - strand, within Psest_1191at 1293.092 kb on - strand, within Psest_1191at 1293.092 kb on - strand, within Psest_1191at 1293.092 kb on - strand, within Psest_1191at 1293.133 kb on + strand, within Psest_1191at 1293.133 kb on + strand, within Psest_1191at 1293.133 kb on + strand, within Psest_1191at 1293.133 kb on + strand, within Psest_1191at 1293.133 kb on + strand, within Psest_1191at 1293.134 kb on - strand, within Psest_1191at 1293.134 kb on - strand, within Psest_1191at 1293.169 kb on + strand, within Psest_1191at 1293.204 kb on + strand, within Psest_1191at 1293.259 kb on + strand, within Psest_1191at 1293.259 kb on + strand, within Psest_1191at 1293.259 kb on + strand, within Psest_1191at 1293.260 kb on - strand, within Psest_1191at 1293.325 kb on + strand, within Psest_1191at 1293.343 kb on + strand, within Psest_1191at 1293.343 kb on + strand, within Psest_1191at 1293.344 kb on - strand, within Psest_1191at 1293.344 kb on - strand, within Psest_1191at 1293.388 kb on + strand, within Psest_1191at 1293.388 kb on + strand, within Psest_1191at 1293.388 kb on + strand, within Psest_1191at 1293.388 kb on + strand, within Psest_1191at 1293.388 kb on + strand, within Psest_1191at 1293.389 kb on - strand, within Psest_1191at 1293.389 kb on - strand, within Psest_1191at 1293.389 kb on - strand, within Psest_1191at 1293.389 kb on - strand, within Psest_1191at 1293.389 kb on - strand, within Psest_1191at 1293.389 kb on - strand, within Psest_1191at 1293.419 kb on - strand, within Psest_1191at 1293.419 kb on - strand, within Psest_1191at 1293.419 kb on - strand, within Psest_1191at 1293.419 kb on - strand, within Psest_1191at 1293.511 kb on + strand, within Psest_1191at 1293.556 kb on + strand, within Psest_1191at 1293.556 kb on + strand, within Psest_1191at 1293.556 kb on + strand, within Psest_1191at 1293.557 kb on - strand, within Psest_1191at 1293.557 kb on - strand, within Psest_1191at 1293.652 kb on + strand, within Psest_1191at 1293.652 kb on + strand, within Psest_1191at 1293.652 kb on + strand, within Psest_1191at 1293.653 kb on - strand, within Psest_1191at 1293.665 kb on - strand, within Psest_1191at 1293.665 kb on - strand, within Psest_1191at 1293.670 kb on + strand, within Psest_1191at 1293.670 kb on + strand, within Psest_1191at 1293.670 kb on + strand, within Psest_1191at 1293.670 kb on + strand, within Psest_1191at 1293.670 kb on + strand, within Psest_1191at 1293.671 kb on - strand, within Psest_1191at 1293.671 kb on - strand, within Psest_1191at 1293.671 kb on - strand, within Psest_1191at 1293.776 kb on + strandat 1293.776 kb on + strandat 1293.776 kb on + strandat 1293.776 kb on + strandat 1293.776 kb on + strandat 1293.776 kb on + strandat 1293.801 kb on + strandat 1293.802 kb on - strandat 1293.822 kb on - strandat 1293.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample3
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1,291,524 - +0.9
1,291,690 + -0.0
1,291,690 + -2.4
1,291,736 + +0.7
1,291,737 - +0.4
1,292,080 + Psest_1189 0.85 -1.0
1,292,081 - Psest_1189 0.85 +2.4
1,292,356 + Psest_1190 0.21 +0.3
1,292,356 + Psest_1190 0.21 +0.8
1,292,356 + Psest_1190 0.21 +1.0
1,292,357 - Psest_1190 0.21 +0.6
1,292,584 + Psest_1190 0.55 -1.1
1,292,584 + Psest_1190 0.55 +0.5
1,292,585 - Psest_1190 0.55 +0.2
1,292,585 - Psest_1190 0.55 -1.6
1,292,701 + Psest_1190 0.72 +1.2
1,292,701 + Psest_1190 0.72 +1.7
1,292,701 + Psest_1190 0.72 -1.0
1,292,701 + Psest_1190 0.72 -0.2
1,292,701 + Psest_1190 0.72 -1.4
1,292,702 - Psest_1190 0.72 +0.7
1,292,704 + Psest_1190 0.73 +0.2
1,292,704 + Psest_1190 0.73 +3.4
1,292,704 + Psest_1190 0.73 -0.8
1,292,704 + Psest_1190 0.73 +0.7
1,292,704 + Psest_1190 0.73 +0.3
1,292,704 + Psest_1190 0.73 +1.1
1,292,705 - Psest_1190 0.73 +1.1
1,292,705 - Psest_1190 0.73 +0.1
1,292,705 - Psest_1190 0.73 -0.0
1,292,705 - Psest_1190 0.73 +1.4
1,292,705 - Psest_1190 0.73 -0.3
1,292,705 - Psest_1190 0.73 +1.1
1,292,705 - Psest_1190 0.73 -0.1
1,292,705 - Psest_1190 0.73 +0.6
1,292,707 + Psest_1190 0.73 +0.6
1,292,707 + Psest_1190 0.73 -0.4
1,292,707 + Psest_1190 0.73 -0.7
1,292,707 + Psest_1190 0.73 -0.0
1,292,708 - Psest_1190 0.73 +1.0
1,292,708 - Psest_1190 0.73 +1.6
1,292,888 + +1.0
1,292,889 - +0.7
1,292,889 - -1.6
1,292,966 - +0.4
1,293,035 - -1.0
1,293,055 + Psest_1191 0.11 +0.1
1,293,055 + Psest_1191 0.11 -0.4
1,293,055 + Psest_1191 0.11 +0.2
1,293,076 + Psest_1191 0.14 +0.1
1,293,076 + Psest_1191 0.14 +0.1
1,293,077 - Psest_1191 0.14 +0.1
1,293,091 + Psest_1191 0.16 +0.7
1,293,091 + Psest_1191 0.16 -0.6
1,293,091 + Psest_1191 0.16 -2.2
1,293,091 + Psest_1191 0.16 -0.8
1,293,092 - Psest_1191 0.16 -0.8
1,293,092 - Psest_1191 0.16 +3.7
1,293,092 - Psest_1191 0.16 +1.1
1,293,092 - Psest_1191 0.16 -0.0
1,293,092 - Psest_1191 0.16 +0.8
1,293,133 + Psest_1191 0.21 +1.6
1,293,133 + Psest_1191 0.21 +1.6
1,293,133 + Psest_1191 0.21 +0.6
1,293,133 + Psest_1191 0.21 +0.9
1,293,133 + Psest_1191 0.21 -0.2
1,293,134 - Psest_1191 0.21 +1.4
1,293,134 - Psest_1191 0.21 -1.2
1,293,169 + Psest_1191 0.25 +0.2
1,293,204 + Psest_1191 0.30 +2.0
1,293,259 + Psest_1191 0.36 +0.6
1,293,259 + Psest_1191 0.36 +1.1
1,293,259 + Psest_1191 0.36 +0.1
1,293,260 - Psest_1191 0.36 +0.5
1,293,325 + Psest_1191 0.44 +2.8
1,293,343 + Psest_1191 0.47 -0.1
1,293,343 + Psest_1191 0.47 +0.1
1,293,344 - Psest_1191 0.47 +0.7
1,293,344 - Psest_1191 0.47 -0.4
1,293,388 + Psest_1191 0.52 -0.4
1,293,388 + Psest_1191 0.52 +0.5
1,293,388 + Psest_1191 0.52 +0.9
1,293,388 + Psest_1191 0.52 +1.4
1,293,388 + Psest_1191 0.52 +1.9
1,293,389 - Psest_1191 0.52 +0.6
1,293,389 - Psest_1191 0.52 +0.9
1,293,389 - Psest_1191 0.52 +0.6
1,293,389 - Psest_1191 0.52 +1.7
1,293,389 - Psest_1191 0.52 -0.3
1,293,389 - Psest_1191 0.52 -0.0
1,293,419 - Psest_1191 0.56 +0.7
1,293,419 - Psest_1191 0.56 -0.1
1,293,419 - Psest_1191 0.56 +0.6
1,293,419 - Psest_1191 0.56 -0.4
1,293,511 + Psest_1191 0.67 -0.5
1,293,556 + Psest_1191 0.73 +0.2
1,293,556 + Psest_1191 0.73 -0.2
1,293,556 + Psest_1191 0.73 -1.0
1,293,557 - Psest_1191 0.73 +0.9
1,293,557 - Psest_1191 0.73 -0.1
1,293,652 + Psest_1191 0.85 +2.0
1,293,652 + Psest_1191 0.85 +0.4
1,293,652 + Psest_1191 0.85 -0.3
1,293,653 - Psest_1191 0.85 -2.2
1,293,665 - Psest_1191 0.86 +0.1
1,293,665 - Psest_1191 0.86 -0.7
1,293,670 + Psest_1191 0.87 +0.4
1,293,670 + Psest_1191 0.87 +1.6
1,293,670 + Psest_1191 0.87 -1.4
1,293,670 + Psest_1191 0.87 +0.3
1,293,670 + Psest_1191 0.87 +0.9
1,293,671 - Psest_1191 0.87 -0.4
1,293,671 - Psest_1191 0.87 -0.2
1,293,671 - Psest_1191 0.87 -1.0
1,293,776 + -0.1
1,293,776 + -1.4
1,293,776 + +0.4
1,293,776 + +0.9
1,293,776 + +0.7
1,293,776 + +0.6
1,293,801 + +3.2
1,293,802 - -0.0
1,293,822 - -0.7
1,293,822 - -0.9

Or see this region's nucleotide sequence