Experiment: Lactate-nitrate; anaerobic; nickel stress sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0902 and Psest_0903 are separated by 138 nucleotides Psest_0903 and Psest_0904 are separated by 66 nucleotides
Psest_0902: Psest_0902 - Predicted transcriptional regulators, at 980,249 to 980,554
_0902
Psest_0903: Psest_0903 - luciferase-type oxidoreductase, BA3436 family, at 980,693 to 981,676
_0903
Psest_0904: Psest_0904 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 981,743 to 982,867
_0904
Position (kb) 980
981
982 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 979.743 kb on + strand at 979.744 kb on - strand at 980.004 kb on + strand at 980.103 kb on + strand at 980.104 kb on - strand at 980.104 kb on - strand at 980.104 kb on - strand at 980.104 kb on - strand at 980.136 kb on + strand at 980.137 kb on - strand at 980.137 kb on - strand at 980.178 kb on + strand at 980.232 kb on + strand at 980.232 kb on + strand at 980.287 kb on + strand, within Psest_0902 at 980.307 kb on + strand, within Psest_0902 at 980.307 kb on + strand, within Psest_0902 at 980.308 kb on - strand, within Psest_0902 at 980.308 kb on - strand, within Psest_0902 at 980.308 kb on - strand, within Psest_0902 at 980.310 kb on + strand, within Psest_0902 at 980.311 kb on - strand, within Psest_0902 at 980.311 kb on - strand, within Psest_0902 at 980.311 kb on - strand, within Psest_0902 at 980.370 kb on + strand, within Psest_0902 at 980.371 kb on - strand, within Psest_0902 at 980.416 kb on + strand, within Psest_0902 at 980.417 kb on - strand, within Psest_0902 at 980.548 kb on + strand at 980.548 kb on + strand at 980.549 kb on - strand at 980.549 kb on - strand at 980.549 kb on - strand at 980.586 kb on + strand at 980.587 kb on - strand at 980.591 kb on - strand at 980.683 kb on + strand at 980.683 kb on + strand at 980.684 kb on - strand at 980.684 kb on - strand at 980.684 kb on - strand at 980.699 kb on - strand at 980.737 kb on + strand at 980.737 kb on + strand at 980.737 kb on + strand at 980.738 kb on - strand at 980.738 kb on - strand at 980.738 kb on - strand at 980.779 kb on + strand at 980.779 kb on + strand at 980.779 kb on + strand at 980.779 kb on + strand at 980.779 kb on + strand at 980.782 kb on + strand at 980.782 kb on + strand at 980.782 kb on + strand at 980.782 kb on + strand at 980.783 kb on - strand at 980.783 kb on - strand at 980.784 kb on + strand at 980.784 kb on + strand at 980.784 kb on + strand at 980.785 kb on - strand at 980.785 kb on - strand at 980.810 kb on + strand, within Psest_0903 at 980.810 kb on + strand, within Psest_0903 at 980.810 kb on + strand, within Psest_0903 at 980.810 kb on + strand, within Psest_0903 at 980.854 kb on + strand, within Psest_0903 at 980.854 kb on + strand, within Psest_0903 at 980.855 kb on - strand, within Psest_0903 at 980.873 kb on + strand, within Psest_0903 at 980.922 kb on + strand, within Psest_0903 at 980.922 kb on + strand, within Psest_0903 at 980.922 kb on + strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.923 kb on - strand, within Psest_0903 at 980.946 kb on + strand, within Psest_0903 at 980.946 kb on + strand, within Psest_0903 at 980.946 kb on + strand, within Psest_0903 at 980.947 kb on - strand, within Psest_0903 at 980.947 kb on - strand, within Psest_0903 at 980.947 kb on - strand, within Psest_0903 at 980.950 kb on + strand, within Psest_0903 at 980.951 kb on - strand, within Psest_0903 at 980.951 kb on - strand, within Psest_0903 at 980.951 kb on - strand, within Psest_0903 at 981.024 kb on + strand, within Psest_0903 at 981.024 kb on + strand, within Psest_0903 at 981.098 kb on + strand, within Psest_0903 at 981.099 kb on - strand, within Psest_0903 at 981.099 kb on - strand, within Psest_0903 at 981.112 kb on + strand, within Psest_0903 at 981.112 kb on + strand, within Psest_0903 at 981.113 kb on - strand, within Psest_0903 at 981.140 kb on + strand, within Psest_0903 at 981.140 kb on + strand, within Psest_0903 at 981.141 kb on - strand, within Psest_0903 at 981.364 kb on + strand, within Psest_0903 at 981.364 kb on + strand, within Psest_0903 at 981.365 kb on - strand, within Psest_0903 at 981.387 kb on - strand, within Psest_0903 at 981.404 kb on - strand, within Psest_0903 at 981.404 kb on - strand, within Psest_0903 at 981.417 kb on + strand, within Psest_0903 at 981.418 kb on - strand, within Psest_0903 at 981.426 kb on + strand, within Psest_0903 at 981.426 kb on + strand, within Psest_0903 at 981.426 kb on + strand, within Psest_0903 at 981.427 kb on - strand, within Psest_0903 at 981.427 kb on - strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.548 kb on + strand, within Psest_0903 at 981.549 kb on - strand, within Psest_0903 at 981.562 kb on + strand, within Psest_0903 at 981.562 kb on + strand, within Psest_0903 at 981.562 kb on + strand, within Psest_0903 at 981.562 kb on + strand, within Psest_0903 at 981.562 kb on + strand, within Psest_0903 at 981.563 kb on - strand, within Psest_0903 at 981.563 kb on - strand, within Psest_0903 at 981.563 kb on - strand, within Psest_0903 at 981.605 kb on + strand at 981.605 kb on + strand at 981.605 kb on + strand at 981.606 kb on - strand at 981.606 kb on - strand at 981.606 kb on - strand at 981.606 kb on - strand at 981.606 kb on - strand at 981.606 kb on - strand at 981.606 kb on - strand at 981.672 kb on + strand at 981.673 kb on - strand at 981.673 kb on - strand at 981.680 kb on + strand at 981.680 kb on + strand at 981.680 kb on + strand at 981.681 kb on - strand at 981.681 kb on - strand at 981.681 kb on - strand at 981.681 kb on - strand at 981.681 kb on - strand at 981.681 kb on - strand at 981.681 kb on - strand at 981.722 kb on - strand at 981.722 kb on - strand at 981.722 kb on - strand at 981.722 kb on - strand at 981.744 kb on + strand at 981.744 kb on + strand at 981.753 kb on + strand at 981.753 kb on + strand at 981.753 kb on + strand at 981.754 kb on - strand at 981.792 kb on + strand at 981.908 kb on + strand, within Psest_0904 at 981.909 kb on - strand, within Psest_0904 at 981.936 kb on + strand, within Psest_0904 at 981.937 kb on - strand, within Psest_0904 at 981.937 kb on - strand, within Psest_0904 at 981.937 kb on - strand, within Psest_0904 at 981.948 kb on + strand, within Psest_0904 at 981.948 kb on + strand, within Psest_0904 at 981.948 kb on + strand, within Psest_0904 at 981.948 kb on + strand, within Psest_0904 at 981.948 kb on + strand, within Psest_0904 at 981.952 kb on + strand, within Psest_0904 at 981.952 kb on + strand, within Psest_0904 at 981.952 kb on + strand, within Psest_0904 at 981.952 kb on + strand, within Psest_0904 at 981.952 kb on + strand, within Psest_0904 at 981.953 kb on - strand, within Psest_0904 at 981.953 kb on - strand, within Psest_0904 at 981.953 kb on - strand, within Psest_0904 at 981.953 kb on - strand, within Psest_0904 at 981.953 kb on - strand, within Psest_0904 at 981.953 kb on - strand, within Psest_0904 at 981.973 kb on + strand, within Psest_0904 at 981.973 kb on + strand, within Psest_0904 at 982.055 kb on + strand, within Psest_0904 at 982.055 kb on + strand, within Psest_0904 at 982.055 kb on + strand, within Psest_0904 at 982.056 kb on - strand, within Psest_0904 at 982.086 kb on + strand, within Psest_0904 at 982.086 kb on + strand, within Psest_0904 at 982.086 kb on + strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.087 kb on - strand, within Psest_0904 at 982.122 kb on + strand, within Psest_0904 at 982.254 kb on + strand, within Psest_0904 at 982.255 kb on - strand, within Psest_0904 at 982.276 kb on + strand, within Psest_0904 at 982.305 kb on + strand, within Psest_0904 at 982.394 kb on + strand, within Psest_0904 at 982.394 kb on + strand, within Psest_0904 at 982.395 kb on - strand, within Psest_0904 at 982.442 kb on - strand, within Psest_0904 at 982.625 kb on + strand, within Psest_0904 at 982.625 kb on + strand, within Psest_0904 at 982.625 kb on + strand, within Psest_0904 at 982.625 kb on + strand, within Psest_0904 at 982.626 kb on - strand, within Psest_0904 at 982.626 kb on - strand, within Psest_0904 at 982.640 kb on - strand, within Psest_0904 at 982.640 kb on - strand, within Psest_0904
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample2 remove 979,743 + -0.3 979,744 - -0.7 980,004 + -1.8 980,103 + -0.4 980,104 - +0.4 980,104 - +0.2 980,104 - -1.8 980,104 - +0.4 980,136 + -1.0 980,137 - -1.2 980,137 - -2.7 980,178 + -1.6 980,232 + -0.8 980,232 + +0.8 980,287 + Psest_0902 0.12 -2.2 980,307 + Psest_0902 0.19 -2.4 980,307 + Psest_0902 0.19 -1.2 980,308 - Psest_0902 0.19 +1.8 980,308 - Psest_0902 0.19 -1.2 980,308 - Psest_0902 0.19 -0.2 980,310 + Psest_0902 0.20 -0.8 980,311 - Psest_0902 0.20 +0.5 980,311 - Psest_0902 0.20 +2.7 980,311 - Psest_0902 0.20 -2.0 980,370 + Psest_0902 0.40 +2.3 980,371 - Psest_0902 0.40 -1.3 980,416 + Psest_0902 0.55 -1.8 980,417 - Psest_0902 0.55 +0.6 980,548 + +1.3 980,548 + +0.1 980,549 - -4.2 980,549 - +1.6 980,549 - -1.5 980,586 + +0.2 980,587 - +0.2 980,591 - -0.6 980,683 + +0.3 980,683 + +0.6 980,684 - +0.4 980,684 - +1.8 980,684 - +2.1 980,699 - -1.2 980,737 + -0.8 980,737 + +0.5 980,737 + -2.2 980,738 - -3.2 980,738 - +1.6 980,738 - +1.5 980,779 + -0.4 980,779 + -1.7 980,779 + -1.3 980,779 + +1.1 980,779 + -2.2 980,782 + -0.2 980,782 + -1.4 980,782 + -0.8 980,782 + +3.0 980,783 - -1.5 980,783 - +0.9 980,784 + +0.3 980,784 + +0.2 980,784 + +1.1 980,785 - -0.5 980,785 - +0.8 980,810 + Psest_0903 0.12 +0.6 980,810 + Psest_0903 0.12 -1.7 980,810 + Psest_0903 0.12 -1.2 980,810 + Psest_0903 0.12 -0.6 980,854 + Psest_0903 0.16 +1.3 980,854 + Psest_0903 0.16 -0.2 980,855 - Psest_0903 0.16 -1.2 980,873 + Psest_0903 0.18 -1.8 980,922 + Psest_0903 0.23 -0.3 980,922 + Psest_0903 0.23 +0.8 980,922 + Psest_0903 0.23 -0.9 980,923 - Psest_0903 0.23 -0.4 980,923 - Psest_0903 0.23 -0.7 980,923 - Psest_0903 0.23 +0.2 980,923 - Psest_0903 0.23 +0.1 980,923 - Psest_0903 0.23 +0.0 980,923 - Psest_0903 0.23 -0.6 980,923 - Psest_0903 0.23 +1.0 980,946 + Psest_0903 0.26 -1.5 980,946 + Psest_0903 0.26 -0.2 980,946 + Psest_0903 0.26 -0.5 980,947 - Psest_0903 0.26 -0.1 980,947 - Psest_0903 0.26 -0.9 980,947 - Psest_0903 0.26 +0.2 980,950 + Psest_0903 0.26 -0.3 980,951 - Psest_0903 0.26 -2.0 980,951 - Psest_0903 0.26 -1.3 980,951 - Psest_0903 0.26 -1.1 981,024 + Psest_0903 0.34 -0.6 981,024 + Psest_0903 0.34 +0.8 981,098 + Psest_0903 0.41 +0.5 981,099 - Psest_0903 0.41 -3.4 981,099 - Psest_0903 0.41 +0.1 981,112 + Psest_0903 0.43 +0.1 981,112 + Psest_0903 0.43 -0.2 981,113 - Psest_0903 0.43 +0.3 981,140 + Psest_0903 0.45 -1.2 981,140 + Psest_0903 0.45 +0.2 981,141 - Psest_0903 0.46 +0.0 981,364 + Psest_0903 0.68 -0.8 981,364 + Psest_0903 0.68 -2.0 981,365 - Psest_0903 0.68 +1.8 981,387 - Psest_0903 0.71 -0.4 981,404 - Psest_0903 0.72 -0.5 981,404 - Psest_0903 0.72 -1.1 981,417 + Psest_0903 0.74 -0.1 981,418 - Psest_0903 0.74 -1.1 981,426 + Psest_0903 0.74 -0.8 981,426 + Psest_0903 0.74 +4.0 981,426 + Psest_0903 0.74 -0.0 981,427 - Psest_0903 0.75 -1.0 981,427 - Psest_0903 0.75 +0.2 981,548 + Psest_0903 0.87 +0.2 981,548 + Psest_0903 0.87 -0.2 981,548 + Psest_0903 0.87 +0.7 981,548 + Psest_0903 0.87 +1.0 981,548 + Psest_0903 0.87 +1.4 981,548 + Psest_0903 0.87 -0.2 981,548 + Psest_0903 0.87 +0.2 981,548 + Psest_0903 0.87 +1.0 981,548 + Psest_0903 0.87 +1.8 981,548 + Psest_0903 0.87 -1.5 981,548 + Psest_0903 0.87 -0.2 981,549 - Psest_0903 0.87 -0.7 981,562 + Psest_0903 0.88 -0.9 981,562 + Psest_0903 0.88 -0.2 981,562 + Psest_0903 0.88 -1.5 981,562 + Psest_0903 0.88 +1.3 981,562 + Psest_0903 0.88 -0.5 981,563 - Psest_0903 0.88 -2.5 981,563 - Psest_0903 0.88 +0.9 981,563 - Psest_0903 0.88 -0.6 981,605 + -0.6 981,605 + +0.7 981,605 + +1.1 981,606 - -0.5 981,606 - -0.0 981,606 - +0.5 981,606 - +0.7 981,606 - -0.4 981,606 - +0.6 981,606 - -0.1 981,672 + -0.7 981,673 - -2.1 981,673 - -2.0 981,680 + +0.1 981,680 + +0.8 981,680 + +0.8 981,681 - +1.2 981,681 - -0.4 981,681 - +0.9 981,681 - +0.1 981,681 - -0.4 981,681 - -0.5 981,681 - -0.6 981,722 - -1.4 981,722 - -1.4 981,722 - -0.5 981,722 - +0.2 981,744 + -0.9 981,744 + -0.4 981,753 + +0.8 981,753 + +1.5 981,753 + +0.5 981,754 - +0.3 981,792 + -1.5 981,908 + Psest_0904 0.15 +0.2 981,909 - Psest_0904 0.15 -0.5 981,936 + Psest_0904 0.17 +0.1 981,937 - Psest_0904 0.17 +0.7 981,937 - Psest_0904 0.17 -0.4 981,937 - Psest_0904 0.17 +0.2 981,948 + Psest_0904 0.18 +1.4 981,948 + Psest_0904 0.18 +0.1 981,948 + Psest_0904 0.18 -0.4 981,948 + Psest_0904 0.18 -0.6 981,948 + Psest_0904 0.18 -1.1 981,952 + Psest_0904 0.19 +1.5 981,952 + Psest_0904 0.19 +1.8 981,952 + Psest_0904 0.19 -0.9 981,952 + Psest_0904 0.19 +0.2 981,952 + Psest_0904 0.19 +0.2 981,953 - Psest_0904 0.19 +1.3 981,953 - Psest_0904 0.19 +0.2 981,953 - Psest_0904 0.19 +0.2 981,953 - Psest_0904 0.19 +0.5 981,953 - Psest_0904 0.19 +1.4 981,953 - Psest_0904 0.19 -0.2 981,973 + Psest_0904 0.20 -0.9 981,973 + Psest_0904 0.20 +0.1 982,055 + Psest_0904 0.28 -0.2 982,055 + Psest_0904 0.28 +0.6 982,055 + Psest_0904 0.28 -0.3 982,056 - Psest_0904 0.28 +0.7 982,086 + Psest_0904 0.30 +0.8 982,086 + Psest_0904 0.30 +0.1 982,086 + Psest_0904 0.30 +0.4 982,087 - Psest_0904 0.31 +0.2 982,087 - Psest_0904 0.31 -2.4 982,087 - Psest_0904 0.31 +0.4 982,087 - Psest_0904 0.31 -0.5 982,087 - Psest_0904 0.31 +0.3 982,087 - Psest_0904 0.31 -0.6 982,087 - Psest_0904 0.31 +1.4 982,087 - Psest_0904 0.31 +0.9 982,087 - Psest_0904 0.31 +0.1 982,087 - Psest_0904 0.31 +0.8 982,122 + Psest_0904 0.34 -1.8 982,254 + Psest_0904 0.45 -0.8 982,255 - Psest_0904 0.46 -0.2 982,276 + Psest_0904 0.47 +0.7 982,305 + Psest_0904 0.50 +0.0 982,394 + Psest_0904 0.58 +0.3 982,394 + Psest_0904 0.58 +1.0 982,395 - Psest_0904 0.58 +0.3 982,442 - Psest_0904 0.62 +0.3 982,625 + Psest_0904 0.78 +1.0 982,625 + Psest_0904 0.78 -0.1 982,625 + Psest_0904 0.78 +2.8 982,625 + Psest_0904 0.78 -0.8 982,626 - Psest_0904 0.78 -3.5 982,626 - Psest_0904 0.78 +1.5 982,640 - Psest_0904 0.80 +0.3 982,640 - Psest_0904 0.80 +0.9
Or see this region's nucleotide sequence