Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0727

Experiment: Lactate-nitrate; anaerobic; nickel stress sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0726 and Psest_0727 are separated by 262 nucleotidesPsest_0727 and Psest_0728 are separated by 12 nucleotidesPsest_0728 and Psest_0729 are separated by 50 nucleotides Psest_0726: Psest_0726 - Membrane protein required for beta-lactamase induction, at 795,264 to 796,100 _0726 Psest_0727: Psest_0727 - Methyl-accepting chemotaxis protein, at 796,363 to 798,393 _0727 Psest_0728: Psest_0728 - hydrolase, TatD family, at 798,406 to 799,191 _0728 Psest_0729: Psest_0729 - hypothetical protein, at 799,242 to 799,484 _0729 Position (kb) 796 797 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 795.415 kb on + strand, within Psest_0726at 795.519 kb on + strand, within Psest_0726at 795.519 kb on + strand, within Psest_0726at 795.520 kb on - strand, within Psest_0726at 795.520 kb on - strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.690 kb on + strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.691 kb on - strand, within Psest_0726at 795.854 kb on - strand, within Psest_0726at 795.859 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.934 kb on + strand, within Psest_0726at 795.935 kb on - strand, within Psest_0726at 795.935 kb on - strand, within Psest_0726at 796.045 kb on + strandat 796.249 kb on - strandat 796.249 kb on - strandat 796.274 kb on - strandat 796.345 kb on - strandat 796.368 kb on + strandat 796.369 kb on - strandat 796.369 kb on - strandat 796.369 kb on - strandat 796.369 kb on - strandat 796.378 kb on + strandat 796.379 kb on - strandat 796.379 kb on - strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.471 kb on + strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.472 kb on - strandat 796.474 kb on + strandat 796.474 kb on + strandat 796.975 kb on + strand, within Psest_0727at 796.976 kb on - strand, within Psest_0727at 796.994 kb on - strand, within Psest_0727at 796.994 kb on - strand, within Psest_0727at 797.062 kb on + strand, within Psest_0727at 797.112 kb on + strand, within Psest_0727at 797.113 kb on - strand, within Psest_0727at 797.224 kb on + strand, within Psest_0727at 797.258 kb on - strand, within Psest_0727at 797.258 kb on - strand, within Psest_0727at 797.381 kb on - strand, within Psest_0727at 797.387 kb on - strand, within Psest_0727at 797.398 kb on + strand, within Psest_0727at 797.398 kb on + strand, within Psest_0727at 797.398 kb on + strand, within Psest_0727at 797.399 kb on - strand, within Psest_0727at 797.399 kb on - strand, within Psest_0727at 797.399 kb on - strand, within Psest_0727at 797.399 kb on - strand, within Psest_0727at 797.463 kb on + strand, within Psest_0727at 798.129 kb on + strand, within Psest_0727at 798.129 kb on + strand, within Psest_0727at 798.130 kb on - strand, within Psest_0727at 798.447 kb on - strandat 798.545 kb on + strand, within Psest_0728at 798.645 kb on + strand, within Psest_0728at 798.686 kb on + strand, within Psest_0728at 798.686 kb on + strand, within Psest_0728at 798.687 kb on - strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.791 kb on - strand, within Psest_0728at 798.791 kb on - strand, within Psest_0728at 798.791 kb on - strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.885 kb on - strand, within Psest_0728at 798.885 kb on - strand, within Psest_0728at 798.885 kb on - strand, within Psest_0728at 798.887 kb on + strand, within Psest_0728at 798.887 kb on + strand, within Psest_0728at 798.888 kb on - strand, within Psest_0728at 798.888 kb on - strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; nickel stress sample2
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795,415 + Psest_0726 0.18 +0.8
795,519 + Psest_0726 0.30 +1.6
795,519 + Psest_0726 0.30 +1.9
795,520 - Psest_0726 0.31 -1.6
795,520 - Psest_0726 0.31 +0.4
795,690 + Psest_0726 0.51 +0.2
795,690 + Psest_0726 0.51 +2.2
795,690 + Psest_0726 0.51 -0.1
795,690 + Psest_0726 0.51 +0.0
795,690 + Psest_0726 0.51 -0.1
795,690 + Psest_0726 0.51 -0.2
795,690 + Psest_0726 0.51 +0.8
795,690 + Psest_0726 0.51 -0.3
795,690 + Psest_0726 0.51 +0.6
795,690 + Psest_0726 0.51 -0.7
795,690 + Psest_0726 0.51 +0.0
795,691 - Psest_0726 0.51 -0.2
795,691 - Psest_0726 0.51 +0.1
795,691 - Psest_0726 0.51 +0.4
795,691 - Psest_0726 0.51 -0.4
795,691 - Psest_0726 0.51 -0.1
795,691 - Psest_0726 0.51 +0.5
795,691 - Psest_0726 0.51 +2.5
795,854 - Psest_0726 0.70 -0.6
795,859 + Psest_0726 0.71 -0.5
795,934 + Psest_0726 0.80 -1.3
795,934 + Psest_0726 0.80 +1.5
795,934 + Psest_0726 0.80 -0.2
795,934 + Psest_0726 0.80 +0.0
795,934 + Psest_0726 0.80 -1.2
795,935 - Psest_0726 0.80 +0.8
795,935 - Psest_0726 0.80 -0.3
796,045 + +0.2
796,249 - +1.1
796,249 - -0.2
796,274 - -0.5
796,345 - +1.4
796,368 + +0.1
796,369 - -0.7
796,369 - -0.2
796,369 - +1.6
796,369 - +0.3
796,378 + -0.3
796,379 - +0.5
796,379 - -1.2
796,471 + +1.1
796,471 + +0.0
796,471 + +0.6
796,471 + -2.0
796,471 + +0.2
796,471 + -0.1
796,471 + +2.7
796,471 + -0.0
796,471 + +0.2
796,471 + +1.1
796,471 + -0.4
796,472 - +0.4
796,472 - +0.3
796,472 - -0.6
796,472 - +0.6
796,472 - -0.6
796,472 - -0.8
796,472 - +0.2
796,472 - -0.6
796,472 - -0.9
796,474 + -0.1
796,474 + +1.0
796,975 + Psest_0727 0.30 +0.8
796,976 - Psest_0727 0.30 +0.3
796,994 - Psest_0727 0.31 +0.8
796,994 - Psest_0727 0.31 +0.7
797,062 + Psest_0727 0.34 +1.0
797,112 + Psest_0727 0.37 -1.5
797,113 - Psest_0727 0.37 +1.8
797,224 + Psest_0727 0.42 +0.8
797,258 - Psest_0727 0.44 +0.9
797,258 - Psest_0727 0.44 +0.3
797,381 - Psest_0727 0.50 +0.3
797,387 - Psest_0727 0.50 +0.2
797,398 + Psest_0727 0.51 +1.0
797,398 + Psest_0727 0.51 -0.2
797,398 + Psest_0727 0.51 +0.7
797,399 - Psest_0727 0.51 -0.3
797,399 - Psest_0727 0.51 -1.0
797,399 - Psest_0727 0.51 +3.1
797,399 - Psest_0727 0.51 -1.2
797,463 + Psest_0727 0.54 -1.1
798,129 + Psest_0727 0.87 +1.0
798,129 + Psest_0727 0.87 -0.9
798,130 - Psest_0727 0.87 +3.1
798,447 - +0.0
798,545 + Psest_0728 0.18 +1.3
798,645 + Psest_0728 0.30 +1.0
798,686 + Psest_0728 0.36 +1.2
798,686 + Psest_0728 0.36 -0.2
798,687 - Psest_0728 0.36 +1.0
798,790 + Psest_0728 0.49 +1.6
798,790 + Psest_0728 0.49 +0.9
798,790 + Psest_0728 0.49 -0.2
798,790 + Psest_0728 0.49 +1.8
798,791 - Psest_0728 0.49 +0.8
798,791 - Psest_0728 0.49 +0.5
798,791 - Psest_0728 0.49 +0.8
798,884 + Psest_0728 0.61 -0.8
798,884 + Psest_0728 0.61 +1.0
798,884 + Psest_0728 0.61 +2.5
798,884 + Psest_0728 0.61 -2.0
798,884 + Psest_0728 0.61 -0.1
798,884 + Psest_0728 0.61 -0.3
798,884 + Psest_0728 0.61 +1.4
798,885 - Psest_0728 0.61 +1.0
798,885 - Psest_0728 0.61 -0.1
798,885 - Psest_0728 0.61 +1.1
798,887 + Psest_0728 0.61 +0.1
798,887 + Psest_0728 0.61 +0.3
798,888 - Psest_0728 0.61 +1.5
798,888 - Psest_0728 0.61 -0.3
799,019 + Psest_0728 0.78 +2.2
799,019 + Psest_0728 0.78 +0.9
799,019 + Psest_0728 0.78 +1.2
799,019 + Psest_0728 0.78 +0.4
799,019 + Psest_0728 0.78 +1.4
799,020 - Psest_0728 0.78 +2.1
799,020 - Psest_0728 0.78 +0.8
799,020 - Psest_0728 0.78 -0.5
799,020 - Psest_0728 0.78 -0.3
799,020 - Psest_0728 0.78 -0.2
799,020 - Psest_0728 0.78 +0.1
799,020 - Psest_0728 0.78 +0.6
799,023 + Psest_0728 0.78 -1.6
799,023 + Psest_0728 0.78 -0.1
799,023 + Psest_0728 0.78 +0.6
799,023 + Psest_0728 0.78 +0.2
799,024 - Psest_0728 0.79 +0.3
799,024 - Psest_0728 0.79 +0.1
799,024 - Psest_0728 0.79 -0.4
799,024 - Psest_0728 0.79 +0.8
799,075 + Psest_0728 0.85 -1.5
799,075 + Psest_0728 0.85 +0.3
799,075 + Psest_0728 0.85 -0.7
799,075 + Psest_0728 0.85 +0.5
799,075 + Psest_0728 0.85 +0.3
799,075 + Psest_0728 0.85 +0.3
799,076 - Psest_0728 0.85 +1.8
799,076 - Psest_0728 0.85 +0.6
799,076 - Psest_0728 0.85 -1.8
799,076 - Psest_0728 0.85 -0.6
799,076 - Psest_0728 0.85 +1.8
799,076 - Psest_0728 0.85 +1.8
799,076 - Psest_0728 0.85 -0.9
799,232 + +0.6
799,232 + +1.4
799,232 + -1.3
799,232 + +0.1
799,232 + +0.1
799,232 + +0.4
799,232 + -0.0
799,232 + -0.8
799,232 + -1.1
799,232 + +0.5
799,232 + +0.7
799,232 + -0.1
799,232 + +1.1
799,232 + -1.8
799,233 - -0.7
799,233 - -0.4
799,233 - -1.2
799,233 - +0.4
799,233 - -0.8
799,233 - -2.9
799,233 - -1.4
799,233 - +0.8
799,233 - -1.4
799,233 - -0.7
799,233 - -0.8
799,233 - -0.5
799,233 - -0.7
799,233 - +0.6
799,233 - +1.5
799,233 - +1.5
799,233 - +1.0
799,233 - -1.0
799,233 - -0.0
799,233 - +1.4
799,233 - -0.6
799,233 - -1.5
799,233 - -0.3
799,233 - -0.2

Or see this region's nucleotide sequence