Experiment: Lactate-nitrate; anaerobic; cobalt stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0408 and Psest_0409 are separated by 489 nucleotides Psest_0409 and Psest_0410 are separated by 71 nucleotides Psest_0410 and Psest_0411 are separated by 93 nucleotides
Psest_0408: Psest_0408 - Protein involved in catabolism of external DNA, at 443,417 to 444,265
_0408
Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729
_0409
Psest_0410: Psest_0410 - Predicted amidophosphoribosyltransferases, at 445,801 to 446,505
_0410
Psest_0411: Psest_0411 - biotin synthetase, at 446,599 to 447,654
_0411
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 443.953 kb on + strand, within Psest_0408 at 443.954 kb on - strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.036 kb on - strand, within Psest_0408 at 444.253 kb on + strand at 444.254 kb on - strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.310 kb on + strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.311 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.467 kb on - strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.711 kb on + strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.712 kb on - strand at 444.757 kb on - strand at 444.903 kb on + strand, within Psest_0409 at 444.903 kb on + strand, within Psest_0409 at 445.219 kb on - strand, within Psest_0409 at 445.615 kb on - strand, within Psest_0409 at 445.711 kb on + strand at 445.747 kb on - strand at 445.760 kb on + strand at 445.777 kb on + strand at 445.778 kb on - strand at 445.778 kb on - strand at 445.835 kb on + strand at 445.835 kb on + strand at 445.836 kb on - strand at 445.836 kb on - strand at 446.266 kb on - strand, within Psest_0410 at 446.318 kb on + strand, within Psest_0410 at 446.319 kb on - strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.582 kb on - strand at 446.582 kb on - strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample3 remove 443,953 + Psest_0408 0.63 -1.3 443,954 - Psest_0408 0.63 +1.2 444,035 + Psest_0408 0.73 -2.0 444,035 + Psest_0408 0.73 -1.1 444,036 - Psest_0408 0.73 +1.0 444,253 + +0.2 444,254 - +0.8 444,310 + -1.8 444,310 + +0.8 444,310 + +0.0 444,310 + -0.0 444,311 - -1.1 444,311 - -1.7 444,311 - -0.4 444,467 - +0.6 444,467 - -0.6 444,467 - -1.2 444,467 - -1.5 444,467 - +0.1 444,467 - -0.6 444,467 - +0.2 444,467 - -3.0 444,467 - -0.4 444,622 + -0.7 444,622 + -0.3 444,622 + -0.2 444,622 + +0.1 444,622 + +2.4 444,711 + +2.1 444,711 + -0.3 444,711 + -0.8 444,711 + +0.5 444,711 + -0.2 444,712 - +1.2 444,712 - +0.9 444,712 - -1.7 444,712 - +0.3 444,712 - +0.1 444,712 - +0.0 444,712 - -1.0 444,712 - +0.4 444,712 - +1.8 444,712 - +0.5 444,712 - -1.4 444,712 - -0.6 444,712 - +0.9 444,712 - +0.1 444,757 - -1.2 444,903 + Psest_0409 0.15 -1.2 444,903 + Psest_0409 0.15 -0.7 445,219 - Psest_0409 0.48 +0.0 445,615 - Psest_0409 0.88 -1.0 445,711 + -0.8 445,747 - -0.1 445,760 + +0.5 445,777 + +0.0 445,778 - -0.3 445,778 - +1.9 445,835 + -0.3 445,835 + +1.9 445,836 - +1.6 445,836 - +0.1 446,266 - Psest_0410 0.66 +0.2 446,318 + Psest_0410 0.73 -0.6 446,319 - Psest_0410 0.73 +0.6 446,430 + Psest_0410 0.89 -0.6 446,430 + Psest_0410 0.89 -0.0 446,431 - Psest_0410 0.89 -3.0 446,431 - Psest_0410 0.89 +1.2 446,431 - Psest_0410 0.89 -1.8 446,431 - Psest_0410 0.89 +0.6 446,431 - Psest_0410 0.89 +0.0 446,581 + +0.0 446,581 + -0.5 446,581 + +1.8 446,581 + -0.2 446,582 - -2.3 446,582 - +1.2 446,585 + +0.7 446,585 + +3.2 446,585 + -1.1 446,585 + -1.3
Or see this region's nucleotide sequence